PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02758.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22757.3 Da    PI: 4.7199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02758.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.14e-121249238
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                              ie k+ ++v f+kRrng++ KA EL+ L   +++a++
  Rsa1.0_02758.1_g00002.1 12 EIEKKTVKSVAFTKRRNGLFRKAAELCLLSsSTQIAIL 49
                             79***************************725777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-8364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.241351IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-14577IPR002100Transcription factor, MADS-box
PfamPF003193.5E-101355IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSTQIAILA TPPSTNSHAA  60
FYSFGHSSVD HVVSSLLNGR CPLPTEQENK SGLGFWWEDE GFERSENIDE LKEATDAVSR  120
MLNNLRLRLD ALKSNQSDGD VVIHEEEVLQ LCDTERNNNE EMTNQITRLE GASGSGSCLV  180
ENVEDNDLPH HEEFFSDARI DQF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02758.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454191.11e-149PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_018454192.11e-149PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3E5671e-112A0A0D3E567_BRAOL; Uncharacterized protein
STRINGBo9g043530.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.11e-72AGAMOUS-like 55