PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa16g052720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 21805.2 Da PI: 4.9192 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.7 | 1.3e-12 | 13 | 49 | 3 | 38 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 i+nks ++v f+kRrng++ KA+EL+ L d ++a++ Csa16g052720.1 13 IQNKSAKTVAFTKRRNGLFRKASELCLLSpDSQIAIL 49 99**************************757777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 3.84E-16 | 3 | 63 | No hit | No description |
PROSITE profile | PS50066 | 13.316 | 3 | 40 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.5E-8 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-8 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-13 | 5 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-12 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-8 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MGGKKHKIDI VEIQNKSAKT VAFTKRRNGL FRKASELCLL SPDSQIAILA TPLSSNSHAS 60 FYSFGHSSVD QVVSSVLQDQ HPLSANQLEN RSGLRFNWWE DQGFDMSENV DELREAVDAV 120 SRMLNNARVR LDDAVKSNQR DGRLMICNEE TKTTNQNHIL EGESSGSAST LLVNEEDNLH 180 FDDFFTDFNI DPLM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa16g052720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474561.1 | 1e-143 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 2e-40 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0GEX7 | 3e-90 | R0GEX7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010474561.1 | 1e-142 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G60920.1 | 6e-75 | AGAMOUS-like 55 |
Publications ? help Back to Top | |||
---|---|---|---|
|