PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023175m | ||||||||
Common Name | EUTSA_v10023175mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28436.9 Da PI: 5.0766 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.9 | 1.7e-10 | 11 | 49 | 1 | 39 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 ++ienk v+f+kRr g+ KA+ L+ L +a+va++ Thhalv10023175m 11 EKIENKNSLPVSFTKRRYGLYSKASQLCLLSGAQVAILA 49 579*********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-10 | 3 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.914 | 3 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-14 | 4 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.44E-23 | 4 | 83 | No hit | No description |
PRINTS | PR00404 | 6.9E-7 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-11 | 12 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-7 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGGKKRKISI EKIENKNSLP VSFTKRRYGL YSKASQLCLL SGAQVAILAT PVSSKPTVSF 60 FSFGHSSVDS VVSAFLKNQP PPSHQEGLGL GFWWEDERLA KSEDTKELSE AIDSISTMLH 120 NLKGLHSTTV EKREEMKKKR KMKKKDEDLV VHGTHQELDS DQTLILQPTC ASNYFQDDPP 180 ANFEENQFVA VSDTNQELDL DLIKDYEMNG EGLTMSLEMD GVLTNRNSCS DSKAVEDGAL 240 MIHGNSEEDN NLKFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023175m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409474.2 | 0.0 | agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 5e-58 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | V4M7B1 | 0.0 | V4M7B1_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006409474.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04640.1 | 2e-69 | AGAMOUS-like 99 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023175m |
Entrez Gene | 18025952 |
Publications ? help Back to Top | |||
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