PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g078300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 282aa MW: 31633.2 Da PI: 4.3061 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27 | 5.7e-09 | 14 | 53 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+i+ k+ t kRr+g++ KA L+ L +a+vav+ Csa11g078300.1 14 KPIKKKTSLAPTCNKRREGLFSKAAQLCLLSGAQVAVLAT 53 56788888888999***********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-12 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.783 | 6 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-13 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-9 | 16 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MVKKGGMKRK IEIKPIKKKT SLAPTCNKRR EGLFSKAAQL CLLSGAQVAV LATPSSSESN 60 VSFYSFGHSS LDGVVSAFLS GRRPVPVPDP DDDKAMREDV GICLTRQNLG LGFWWNNERL 120 IRSEDPREIS DAIDSMWTLL GNLKELRADE ASFVNDHDDL KNNEKSDGAT QEPDQTLNHH 180 LQSTSPIIRC IPPPLDDQST CPDDYSLIPD TVFTDDQILP LCESFCVTDN NNNNSFTEVN 240 LDFDQELDID QLIDFHTDFE NSLDNWYTHQ ENLDQCFPYI S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g078300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445968.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0GDK7 | 1e-126 | R0GDK7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445968.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38620.1 | 8e-85 | M-type_MADS family protein |