PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g078300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31633.2 Da    PI: 4.3061
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g078300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.7e-091453140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    k+i+ k+    t  kRr+g++ KA  L+ L +a+vav+  
  Csa11g078300.1 14 KPIKKKTSLAPTCNKRREGLFSKAAQLCLLSGAQVAVLAT 53
                    56788888888999***********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-12666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.783658IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-13879IPR002100Transcription factor, MADS-box
PfamPF003191.7E-91656IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVKKGGMKRK IEIKPIKKKT SLAPTCNKRR EGLFSKAAQL CLLSGAQVAV LATPSSSESN  60
VSFYSFGHSS LDGVVSAFLS GRRPVPVPDP DDDKAMREDV GICLTRQNLG LGFWWNNERL  120
IRSEDPREIS DAIDSMWTLL GNLKELRADE ASFVNDHDDL KNNEKSDGAT QEPDQTLNHH  180
LQSTSPIIRC IPPPLDDQST CPDDYSLIPD TVFTDDQILP LCESFCVTDN NNNNSFTEVN  240
LDFDQELDID QLIDFHTDFE NSLDNWYTHQ ENLDQCFPYI S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g078300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445968.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0GDK71e-126R0GDK7_9BRAS; Uncharacterized protein
STRINGXP_010445968.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.18e-85M-type_MADS family protein