PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766586
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 384aa    MW: 42829.7 Da    PI: 4.3074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766586genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.93e-091553240
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               +i n     +tf+kR ng++ K + L+ L da +av++ 
  676766586 15 KITNRGSLATTFTKRTNGLFSKVSQLCLLNDAHIAVLVT 53
               677888889***************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-10666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.629652IPR002100Transcription factor, MADS-box
CDDcd002666.75E-18785No hitNo description
SuperFamilySSF554555.1E-13880IPR002100Transcription factor, MADS-box
PfamPF003192.0E-101566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVKRGGTKRK ATMKKITNRG SLATTFTKRT NGLFSKVSQL CLLNDAHIAV LVTPASSNSN  60
VNFYSFGHSS VDSVVNAYLT GQRPVGEETT RVDDEDIGIC MARKELGLDL WWEDDHLLQS  120
SNTDELIEKI SRMLVKLKDL RSQDHQTFVN ECLKNNNKPK DQTLILPSDN GDDLPADFNN  180
TNQEHAQTLI LQSDSSFNNT SEDLVAGYTN VMTEEQDQIM SICTSFCAPE NNYNNNVLIE  240
EQDQNMAGCD SFSDPNSDLD QLINFDFDMT LDASTFDAAF FDTTTTTTCH EPELEDTTTS  300
SATTAFADDL EKDNLMFSDY LTQLLCRFED NTIYCLYRCN KNGSGLISIN IPCISGKLIK  360
LKPVHLQFLS MCIASTLESK CSNA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397046.11e-69agamous-like MADS-box protein AGL97
TrEMBLV4L4E23e-68V4L4E2_EUTSA; Uncharacterized protein
STRINGXP_006397046.15e-69(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.14e-65M-type_MADS family protein