PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588958.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 420aa    MW: 46843.6 Da    PI: 4.4004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.9e-13177216140
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 
                     k+i nk  r +tfskRr g+  KA  L+vL da++a++  
  XP_013588958.1 177 KKITNKASRATTFSKRRDGLYSKAAQLCVLSDAQIAILAT 216
                     689*********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.273169220IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-15169229IPR002100Transcription factor, MADS-box
CDDcd001201.70E-17170214No hitNo description
PRINTSPR004047.4E-8171191IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-16171244IPR002100Transcription factor, MADS-box
PfamPF003193.1E-13178219IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-8191206IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MILDKVANGI VAESPEKLLN GSWDEIVLSD LIGKNFTFGV YVEKENVAYG AEIYKVGKIY  60
KERMTCVPDA ITHCQSDKHL EITSGDEDSI YLSESQETAD AVSTPSIKRK EDETIDQGDL  120
SSTSKKPCTR SIKIEMVEEA NKKQTLSRLL SQLGFRLFVE KKKRMVKGGT KRKPEMKKIT  180
NKASRATTFS KRRDGLYSKA AQLCVLSDAQ IAILATPSSS NSNASFFSFG HFSVESVVSA  240
YLSGQRLTPV SSSRDTREDL GICMARKDLG LGFWWEDDKL VNSKNPKELM EAMESMEVLM  300
SHLKRLEDQT LTTTVDEDKV EISPDLDEWS DMDLNQLLED CDDVPVPPPV VCNTDKEDEG  360
QNVSEKTCNN NSNSVSSSLP AAAEKSLEEA TMDLDFDSIF EGLISYDDED LFWSDELLSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588958.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3CP680.0A0A0D3CP68_BRAOL; Uncharacterized protein
STRINGBo6g013290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-44M-type_MADS family protein