PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0597s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29467.9 Da PI: 4.4596 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.6 | 7.5e-09 | 11 | 49 | 1 | 39 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+i+ k r fs+Rr+g+ KA+EL+ L +a+ a++ Bostr.0597s0065.1.p 11 KKIQKKESRAGFFSRRRTGLYSKASELCLLSGAQMAILT 49 578889999999***********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.101 | 3 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-8 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-13 | 4 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-5 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-10 | 12 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-5 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGGKKRKIPI KKIQKKESRA GFFSRRRTGL YSKASELCLL SGAQMAILTT PCSSNSDVSF 60 YSFGHSSVDG VVAAFLDDQR PVREKNLGLG FWWEDEDLAK SENSEELRSA IESMSKMLRK 120 LKDSVNNYQR DHQDDVKNND IKKNDLVSHE TRKLDQPLNL QFISAICDNL PTNFNKIAQE 180 QDQIMAAGNL DDGYINQELD LDQLIDFESL LDGDYETTQE HPETAETSLL MNSEMEDVSM 240 VLKDGTLVLQ RGLDEDDLFQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0597s0065.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284913.2 | 1e-124 | agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 1e-52 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0F865 | 1e-106 | R0F865_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.0597s0065.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38620.1 | 2e-49 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0597s0065.1.p |
Publications ? help Back to Top | |||
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