PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g050960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23766.1 Da    PI: 4.2175
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g050960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.69.3e-151351240
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    ++e k  r vtfskRr+g++ KA EL+ L da++a++  
  Csa09g050960.1 13 KVEGKKPRAVTFSKRRKGLFSKAAELCLLSDAQIAILAT 51
                    6788999*****************************863 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-12167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.577449IPR002100Transcription factor, MADS-box
CDDcd002663.14E-21583No hitNo description
PRINTSPR004049.9E-6626IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-151284IPR002100Transcription factor, MADS-box
PfamPF003198.3E-141464IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-62641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGGLKRKIDT EKKVEGKKPR AVTFSKRRKG LFSKAAELCL LSDAQIAILA TPVSSNSHNS  60
FYTFGHSSVD SVVAAFLAGQ TPTRDDVLDD DEKLGFWWED ESLANSENAE ELGDAIDSMK  120
RMLHDLKELQ RDHQHVLVEK DNNNNNASSF TLRGNDDVGE GCSNFDQIFD SVDDETQSQV  180
MPMINLDDDD FFSSDFFNEI DIDALYYAST NF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11628KKPRAVTFSKRRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g050960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431144.11e-156PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_010431147.11e-156PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_010431165.11e-156PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6338e-57AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0HI751e-57R0HI75_9BRAS; Uncharacterized protein
STRINGXP_010431144.11e-155(Camelina sativa)
STRINGXP_010431147.11e-155(Camelina sativa)
STRINGXP_010431165.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.17e-59AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]