PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10029380m | ||||||||
Common Name | EUTSA_v10029380mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 28763.2 Da PI: 4.4079 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.6 | 3.6e-09 | 16 | 53 | 3 | 40 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i k + f+kR g++ KA+ L+ L da++av+ Thhalv10029380m 16 ITKKESLATAFTKRSYGLFSKASQLCLLSDAQIAVLAT 53 566666789**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.25 | 6 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-9 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-12 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.26E-17 | 8 | 86 | No hit | No description |
Pfam | PF00319 | 1.7E-9 | 15 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVKRGGNKRK IPMEKITKKE SLATAFTKRS YGLFSKASQL CLLSDAQIAV LATPPSSHSH 60 VSFFSFGHSS VDSLVSDFLK GKRPLPVARE GTREEDIGVI LARKDLGLGL WWEDEVLAQS 120 ENPQELNDAM KSMSTLLRKF KELREGEAVR SNPNSDRTLI PQTLIPQTLI PDDDLPASFN 180 ENTEEQSKIL AICESFRVTE EKNNINNNND DKDLTGSLEV GCDQEVDIDQ LIDFNTAFDA 240 SAFDDCLLES TEENTTEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10029380m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396824.1 | 0.0 | agamous-like MADS-box protein AGL97 | ||||
TrEMBL | V4L7G0 | 0.0 | V4L7G0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396824.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49420.1 | 2e-58 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10029380m |
Entrez Gene | 18014410 |