PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_11288.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 431aa MW: 47248.8 Da PI: 4.1206

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_11288.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.1	1.1e-08	1	29	11	39
HHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevavii 39 v fskRr g+ KA+ L+vL a+va++ Rsa1.0_11288.1_g00002.1 1 VAFSKRRRGLYSKASQLCVLSRAQVAILA 29 78************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.905	1	28	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.28E-9	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.14E-15	1	59	No hit	No description
Pfam	PF00319	9.8E-8	1	33	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
VAFSKRRRGL YSKASQLCVL SRAQVAILAT PPCSKSNVSF FSFGHSSVDS VVSAFLKNQY 60 PREDHLGSEF WWEDERLAES EDPTELSEAV DSISRMMQNL KGLRSKALAN REDAKKKKKE 120 VVRDQSQTLN LQSTCASSSC IHEDPPENLP GLVKKIKEED QKVAVSDKNN NNKELDGNQT 180 LGFQSSFASI CIQDVSPENV EGVVNSSEQK DQIVVSSDSV NNNGLLGNLD GFDQVLSLDD 240 DFIDFQGLVE NCKEEDHLVD ENKNVIKHGT HQDLDGNQTT GFQSSAASLC TQDVSPESLE 300 GSEHKDQILA SSDSNNGLLG NMDGFNQVLS FADDDFIDFE MDSEGLITTN FDMSVASTNG 360 YSCTGSGSED GAMMVIPSDS VKDNQMVAVS DSNNALPRNL YGCNQEFDID QIFDFVKSTE 420 DLSLNYIDVT P

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

VAFSKRRRGL YSKASQLCVL SRAQVAILAT PPCSKSNVSF FSFGHSSVDS VVSAFLKNQY  60
PREDHLGSEF WWEDERLAES EDPTELSEAV DSISRMMQNL KGLRSKALAN REDAKKKKKE  120
VVRDQSQTLN LQSTCASSSC IHEDPPENLP GLVKKIKEED QKVAVSDKNN NNKELDGNQT  180
LGFQSSFASI CIQDVSPENV EGVVNSSEQK DQIVVSSDSV NNNGLLGNLD GFDQVLSLDD  240
DFIDFQGLVE NCKEEDHLVD ENKNVIKHGT HQDLDGNQTT GFQSSAASLC TQDVSPESLE  300
GSEHKDQILA SSDSNNGLLG NMDGFNQVLS FADDDFIDFE MDSEGLITTN FDMSVASTNG  360
YSCTGSGSED GAMMVIPSDS VKDNQMVAVS DSNNALPRNL YGCNQEFDID QIFDFVKSTE  420
DLSLNYIDVT P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_11288.1_g00002.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443272.1	0.0	PREDICTED: agamous-like MADS-box protein AGL97
TrEMBL	A0A0D3EHV0	1e-124	A0A0D3EHV0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EAE2	1e-124	A0A3P6EAE2_BRAOL; Uncharacterized protein
STRING	Bo9g178940.1	1e-125	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49420.1	4e-48	M-type_MADS family protein