PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g022610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27685.4 Da    PI: 4.1063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g022610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.1e-141250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ie k  r vtfskRr+g++ K  EL+ L da++a++ 
  Csa06g022610.1 12 KKIEKKQPRAVTFSKRRKGLFSKTLELCLLSDAQIAILA 50
                    689*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-12167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.297449IPR002100Transcription factor, MADS-box
CDDcd002661.19E-19583No hitNo description
PRINTSPR004044.5E-5626IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-141078IPR002100Transcription factor, MADS-box
PfamPF003195.6E-131364IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-52641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGALKRKIDT EKKIEKKQPR AVTFSKRRKG LFSKTLELCL LSDAQIAILA TPVSANSHNS  60
FYTFGHSSVD SVVAAFLADE TPTRDVDDEN LGFWWEDESL ANSENAEELG DAIVSMKRML  120
QDLKELQRDH QHVVVEKDNN NNKNNNNNAS SFTLRGNDDV GGCSNQGMEY FDQIFDSEVE  180
TQSQAMPMID YVGEGCSNQG LDFDQIFDSE VHETQSQAAM PMINLDDDEF FSSDFFNDFD  240
IDALYA*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g022610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431101.11e-137PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-51AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0HI752e-53R0HI75_9BRAS; Uncharacterized protein
STRINGXP_010515130.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.15e-54AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]