PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676706524
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 403aa    MW: 45041.6 Da    PI: 4.3921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676706524genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.8e-111351240
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                ie ks ++v fskRr+g+  K  EL+ L +a++a+++ 
  676706524 13 MIEKKSSKSVAFSKRRKGLYSKTAELCLLSGAQAAILVT 51
               599*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-7163IPR002100Transcription factor, MADS-box
CDDcd002666.44E-21584No hitNo description
SuperFamilySSF554556.15E-121279IPR002100Transcription factor, MADS-box
PfamPF003192.7E-111455IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.0121456IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGGLKRKIPT DTMIEKKSSK SVAFSKRRKG LYSKTAELCL LSGAQAAILV TPSCSKSNVS  60
FYSFGHSSVD SVVSAFLTNK RPRDDVVSSP SEFWWEDEQL AKSKDLNELS EALDSIARTL  120
QNLKGLRSAA MANREDVKKE KKAIVVHGTH QALQTLNLPS TSTSMCFHED PPENYYGLAK  180
NIKEEDQIVA IFDNKNKKDL VIHGTHQENQ TLDFQSSSAS LCVQDVSPES LEGFVNNGEQ  240
KDQIIASYGS NNNAYGITGN LLGFNQEVDR DQLTDLETNS EDFIMTNQEL DNVLMNRYSH  300
KDNLHYSESS EDQIVAISDN NNNNALPGHS YGCNQEVTTD QIFDMVTTSE GLSLNSEMDD  360
VSMMNTSQDQ NWCSNYEPVE DEALSFFRDL DQDNLQFSEF FNS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676706524
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548769.11e-122agamous-like MADS-box protein AGL97
TrEMBLA0A0D3EHV01e-118A0A0D3EHV0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EAE21e-118A0A3P6EAE2_BRAOL; Uncharacterized protein
STRINGBo9g178940.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.13e-60AGAMOUS-like 99