PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G38620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 349aa MW: 38849 Da PI: 4.1646 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.1 | 1.1e-08 | 20 | 51 | 9 | 40 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviif 40 vt +kRr+g+ KA+ L+ L da++a++ AT5G38620.1 20 LRVTCTKRRKGLYSKASQLCLLSDAQIAILAT 51 579*************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.035 | 4 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-8 | 4 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.22E-23 | 5 | 84 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-13 | 6 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.3E-10 | 14 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS 60 FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL TRKNLGLGFW WNDESLVRSE 120 NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC 180 CIPENLNDIT QEPNQTLDIQ SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN 240 NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV 300 DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18421777 | 0.0 | ||||
Expression Atlas | AT5G38620 | - | ||||
AtGenExpress | AT5G38620 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G38620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G38740, AT5G40220, AT5G65330 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G38620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005231 | 0.0 | AB005231.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBB18. | |||
GenBank | AY141237 | 0.0 | AY141237.1 Arabidopsis thaliana MADS-box protein AGL73 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198678.1 | 0.0 | MADS-box transcription factor family protein | ||||
Swissprot | Q9C633 | 2e-44 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | Q9FFV9 | 0.0 | Q9FFV9_ARATH; MADS-box protein AGL73 | ||||
STRING | AT5G38620.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 | Representative plant | OGRP10843 | 2 | 8 |
Link Out ? help Back to Top | |
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Phytozome | AT5G38620.1 |
Entrez Gene | 833852 |
iHOP | AT5G38620 |
wikigenes | AT5G38620 |