PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60920.1 | ||||||||
Common Name | AGL55, T7P1.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21501.1 Da PI: 6.6053 | ||||||||
Description | AGAMOUS-like 55 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.9 | 2.3e-12 | 11 | 49 | 1 | 38 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 krie+k r v f+kR+ g++ KA+EL+ L ++++a++ AT1G60920.1 11 KRIEDKNVRAVAFTKRKSGLFHKASELCLLSpGTQIAIL 49 79****************************756787776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.619 | 3 | 40 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-12 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.00E-24 | 4 | 83 | No hit | No description |
PRINTS | PR00404 | 6.5E-9 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-15 | 5 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-11 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-9 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020090 | anatomy | embryo sac central cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS 60 FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED QAFDRLENVD ELKEAVDAVS 120 RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV 180 VDNLHIDDRY Y |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 71035096 | 0.0 | ||||
Expression Atlas | AT1G60920 | - | ||||
AtGenExpress | AT1G60920 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00208 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC018908 | 0.0 | AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176288.1 | 1e-140 | AGAMOUS-like 55 | ||||
Swissprot | Q9C633 | 1e-42 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | Q9C960 | 1e-139 | Q9C960_ARATH; AGAMOUS-like 55 | ||||
STRING | AT1G60920.1 | 1e-140 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 | Representative plant | OGRP10843 | 2 | 8 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60920.1 |
Entrez Gene | 842383 |
iHOP | AT1G60920 |
wikigenes | AT1G60920 |