PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151734.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 261aa    MW: 29185.1 Da    PI: 4.8124
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF291.3e-091956239
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    +i+    r +tfskR  g+  KA  L+ L da++a++ 
  XP_009151734.1 19 KISKREYRATTFSKRCSGLHSKAAQLCLLADAQIAILA 56
                    6888999****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-5973IPR002100Transcription factor, MADS-box
CDDcd002664.44E-171087No hitNo description
PROSITE profilePS5006611.7741055IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-121283IPR002100Transcription factor, MADS-box
PfamPF003191.5E-91960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVKRVGGGGT KRKIDKMEKI SKREYRATTF SKRCSGLHSK AAQLCLLADA QIAILATPPS  60
SQSNVSFFSF GHSSVDAVVN AYLMGQRLAP VREEPMEEDI GVLMARKELG LELWWEKESL  120
CESKDPRELM DAVKAMERML SKLRSGDFVS NYKQREEDLK NNEMTKRDVV LHKETQEPDG  180
TLNLQAVCCI PDDDSPAGCN KITEEQKQIL AICDSFCAKE DNNINGLSGS LDRSDQAMDH  240
LMNIDGLIDL ETSYESSAFD Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151734.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151734.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A3P5YM890.0A0A3P5YM89_BRACM; Uncharacterized protein
TrEMBLM4F8M20.0M4F8M2_BRARP; Uncharacterized protein
STRINGBra037434.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.11e-56M-type_MADS family protein