PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03102.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 270aa    MW: 30225.4 Da    PI: 5.0916
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03102.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77.1e-141149138
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                             k+ie+k  r+vtf+kRrng++ KA EL+ L  ++++a++
  Rsa1.0_03102.1_g00002.1 11 KFIEEKAVRSVTFTKRRNGLFRKAAELCLLSpATQIAIL 49
                             79****************************834567665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-13364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.755351IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-10525IPR002100Transcription factor, MADS-box
CDDcd002661.86E-21580No hitNo description
SuperFamilySSF554552.35E-16596IPR002100Transcription factor, MADS-box
PfamPF003191.8E-111253IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-102540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGGLKRKIEI KFIEEKAVRS VTFTKRRNGL FRKAAELCLL SPATQIAILA TPPATNSHAD  60
FYSFGHSSVD NVVSSLLHDQ SHGDPTNQVE SRRFGFWWED EALERLENVD ELRDATDAVS  120
RMLNNLRLRL DAVRSNQRDG ALVIHQEEVP KIRYTSNEKT NQITNSEGAS GLVIHQDEVP  180
EIRHTNNEKT NQITSSEGAS GLVIHQDEVP QLCNTNTNKK NEETTTQIAN SEGASGSGSS  240
VQKEEDIQHI DGLGIDDFFT DFKFDPLFKF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03102.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454194.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6332e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLM4EEA41e-121M4EEA4_BRARP; Uncharacterized protein
STRINGBra027116.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.14e-72AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]