PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 335aa MW: 37415.4 Da PI: 4.4371 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.1 | 2.6e-14 | 12 | 51 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ie k r+v fskRr+g++ KA+EL+ L ++ +a+++ XP_010548848.1 12 KIEKKEARSVAFSKRREGLFRKASELCLLGNTHIAILVTP 51 79**********************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.9E-14 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.909 | 3 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.30E-23 | 4 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-17 | 5 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-14 | 12 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGGTKRKIPM QKIEKKEARS VAFSKRREGL FRKASELCLL GNTHIAILVT PPSANSNVSF 60 YSFGHSSVDE VVDAFLNNRT PTLCDDHALS RYRESKNKGR LAGKKQTSGL GFRWEEDGFE 120 ETASTRDLEV AIDEISELMN IVRLRLNDMN NQRPRLLEKP KPSESTVQDL DSYGGKHDDS 180 LVGNLALQDS EQPNRNSGNS DIFAEAMANS RIRFGEFGEG PMMEEASSLY EKDLDQTPRL 240 VEKTKIGEST VQDLDTHGGR HDDTLVGNLA PQFSDQPYGI SENSSDIFAE AMAISGIRFE 300 EFGEGPKMQE AEEDSEDPID CINFDDIFPD FPIDF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548848.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548849.1 | 1e-145 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
STRING | XP_010548848.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60920.1 | 2e-43 | AGAMOUS-like 55 |