PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00887.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 308aa    MW: 34520 Da    PI: 3.9665
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00887.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.9e-131553240
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                             +i nks r +tf+kRr g+  KA  L+v +dae+a++  
  Rsa1.0_00887.1_g00007.1 15 KITNKSSRATTFTKRRDGLYSKAAQLCVITDAEIAILAT 53
                             699********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-11666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.563657IPR002100Transcription factor, MADS-box
CDDcd002662.30E-20783No hitNo description
SuperFamilySSF554552.09E-15780IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-5828IPR002100Transcription factor, MADS-box
PfamPF003194.6E-131556IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-52843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVKKGGTKRK HVMTKITNKS SRATTFTKRR DGLYSKAAQL CVITDAEIAI LATPSSSNSN  60
VPFFSFGHSS VESVVSAYLS GQRLAHVSTC DNTKATREDL GICMARKDLG LGFWWDDDKL  120
VNSNDPEELM EAMESTKVLY SRLKELEDQT LTTTTTRIDD EDMVEISPES DEWSEMDLHK  180
LLQDCDCEEE DQSVTDKTCN NSNSVSSAAE RSLEEVTMDL DLDTIITYDD LPDLPPLVDK  240
EEEEEEEDHN VSEETCNNNN NNYVSSLPAA AEKSLEEATM ALDFDSIFEG LMSYDDVDLS  300
WSDDLLFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00887.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442004.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3CP681e-106A0A0D3CP68_BRAOL; Uncharacterized protein
STRINGBo6g013290.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-47M-type_MADS family protein