PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00362.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 348aa    MW: 38969.6 Da    PI: 4.2184
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00362.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.34.7e-092256539
                             SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                   SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                                 r +tf+kR  g+  KA  L+ L+da++a++ 
  Rsa1.0_00362.1_g00007.1 22 KREYRATTFTKRCSGLHSKAAQLCLLTDAQIAILA 56
                             566799**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-5969IPR002100Transcription factor, MADS-box
CDDcd002661.01E-181087No hitNo description
PROSITE profilePS5006611.7881055IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-121284IPR002100Transcription factor, MADS-box
PfamPF003195.4E-91961IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVKSGGRGGT KRKIDKMEKI PKREYRATTF TKRCSGLHSK AAQLCLLTDA QIAILATPPS  60
THSNVSFFSF GHSSVDAVVN AYLTGQRLAP VREEESMEED IGVCMARKEL GLECWWEKES  120
LARSKDPREL MDAMKAIERM LSRLRSGEFA IDHNDEDVIK SDETMAKNET LNLQAVCCVP  180
GDDKIITEEQ DEILAICDSF CAKEEDNNVN GLSGSLDVYD YQEMDVDKLI DFTTYESSIF  240
DGGVLDSTQE LQRSLLMKFE AAGAHDVSTN PNPPISVSEE GAEDVEAALV FQNKKAWDEP  300
ATEVSTMNPY HMIYDFEGVL EGLLEEEAFV FQNRALDEDN LQFSDYFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00362.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483026.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A397Z8M11e-173A0A397Z8M1_BRACM; Uncharacterized protein
STRINGBra010027.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.15e-63M-type_MADS family protein