PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g081500.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 377aa MW: 42405.1 Da PI: 3.9698

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g081500.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.1	1.1e-13	12	50	1	39
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+i+ k r v fskRr+g++ KA+EL+ L d+++a++ Csa05g081500.1 12 KKIDGKNPRAVAFSKRRKGLFNKASELCLLSDTQIAILA 50 67999999****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.6E-10	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.54	4	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.38E-20	5	83	No hit	No description
SuperFamily	SSF55455	3.53E-14	12	97	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-12	13	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGGLKRKIDT GKKIDGKNPR AVAFSKRRKG LFNKASELCL LSDTQIAILA TPISSNSHAS 60 FYSFGHSSVD NVVSAFLAGQ TPPRDDDDDE KLGFWWEDES LGNSQNPEEL GCAIDSMRKM 120 LHDLKELKNK QRDRVDVTHQ QQTLDHQPCS SSLCVEVDDV SVNVQGFQDK NSVDDDVSVN 180 VQGFQNNTDE EQTLPNNDGL LGSFDGCNQE FDLDQLYDFV TKSEDLWKDM EMYDVCVDVE 240 KEKGGSHVTH QQQTLDHQPC SSSLFVDIDD DVSVNVQGFH NNNTEEQQQA LAVSGSFDEE 300 LDVDDIWKNL ELDDLTVNLQ GFQNNTDEEQ TLANDDGLHG SFDGCNQEFD IDQLYDFVTK 360 SEDLWKDMEM YDDCLY*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGGLKRKIDT GKKIDGKNPR AVAFSKRRKG LFNKASELCL LSDTQIAILA TPISSNSHAS  60
FYSFGHSSVD NVVSAFLAGQ TPPRDDDDDE KLGFWWEDES LGNSQNPEEL GCAIDSMRKM  120
LHDLKELKNK QRDRVDVTHQ QQTLDHQPCS SSLCVEVDDV SVNVQGFQDK NSVDDDVSVN  180
VQGFQNNTDE EQTLPNNDGL LGSFDGCNQE FDLDQLYDFV TKSEDLWKDM EMYDVCVDVE  240
KEKGGSHVTH QQQTLDHQPC SSSLFVDIDD DVSVNVQGFH NNNTEEQQQA LAVSGSFDEE  300
LDVDDIWKNL ELDDLTVNLQ GFQNNTDEEQ TLANDDGLHG SFDGCNQEFD IDQLYDFVTK  360
SEDLWKDMEM YDDCLY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g081500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511682.1	0.0	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	1e-71	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0HXS3	2e-80	R0HXS3_9BRAS; Uncharacterized protein
STRING	XP_010511682.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46408.1	6e-74	AGAMOUS-like 97

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]