PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for
Castanea mollissima
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/------------------------------------------------------------------- maker-scaffold06380-augustus-gene-0.8-mRNA-1/104-178 (1) | |------------------------------------------------------------------- maker-scaffold01061-snap-gene-0.34-mRNA-1/62-136 (44) | | /----------------------------------------------------------- maker-scaffold03390-snap-gene-0.30-mRNA-1/85-143 (2) | | | | /------------------------- maker-scaffold24012-snap-gene-0.1-mRNA-1/68-144 (3) | | | | | | /-------- maker-scaffold13668-snap-gene-0.6-mRNA-1/60-124 (9) | | | /---68---+ | | /--100--+ | \-------- maker-scaffold02967-snap-gene-0.23-mRNA-1/26-77 (32) | | | |---63--+ | | | | \----------------- maker-scaffold03291-snap-gene-0.20-mRNA-1/81-133 (67) | | | | | | | \------------------------- maker-scaffold03837-snap-gene-0.21-mRNA-1/68-154 (38) | |------------76-----------+ | | | /-------- maker-scaffold11982-snap-gene-0.6-mRNA-1/101-185 (5) | | | /---97---+ | | | | \-------- maker-scaffold15989-augustus-gene-0.9-mRNA-1/60-143 (61) | | \-------99------+ | | | /-------- maker-scaffold01721-snap-gene-0.25-mRNA-1/59-143 (15) | | \---95---+ | | \-------- maker-scaffold07778-snap-gene-0.20-mRNA-1/89-171 (60) | | | | /-------- maker-scaffold10008-snap-gene-0.10-mRNA-1/27-100 (4) | | /-------100------+ | | | \-------- maker-scaffold00090-snap-gene-1.53-mRNA-1/27-96 (18) | | | | | | /-------- maker-scaffold01269-snap-gene-0.46-mRNA-1/39-125 (11) | | | /---77---+ | | /---98--+ | \-------- maker-scaffold11611-snap-gene-0.9-mRNA-1/27-90 (36) | | | | | | | | | | /-------- maker-scaffold09963-snap-gene-0.13-mRNA-1/39-125 (19) | | | | |---90---+ | | | | | \-------- maker-scaffold02580-snap-gene-0.30-mRNA-1/41-127 (23) | | | \--100--+ + | | | /-------- maker-scaffold04964-snap-gene-0.11-mRNA-1/48-134 (20) | | | |---87---+ | | | | \-------- maker-scaffold16277-snap-gene-0.2-mRNA-1/39-125 (55) | | | | | | | \----------------- maker-scaffold25755-snap-gene-0.0-mRNA-1/39-125 (48) | | | | | | /----------------- maker-scaffold00625-snap-gene-0.46-mRNA-1/12-84 (7) | | | | | | | | /-------- maker-scaffold01488-snap-gene-0.43-mRNA-1/64-103 (12) | | | |---99---+ | | | | \-------- maker-scaffold15409-snap-gene-0.2-mRNA-1/11-96 (54) | | | | | | | |----------------- maker-scaffold08966-snap-gene-0.12-mRNA-1/32-72 (16) | | | /---84--+ | | | | |----------------- maker-scaffold04145-snap-gene-0.9-mRNA-1/61-110 (28) | |------------91-----------+ | | | | | | | /-------- maker-scaffold00469-snap-gene-0.42-mRNA-1/126-210 (30) | | | | |---78---+ | | |---95--+ | \-------- maker-scaffold00506-snap-gene-0.29-mRNA-1/40-122 (46) | | | | | | | | | \----------------- maker-scaffold03734-snap-gene-0.30-mRNA-1/8-46 (34) | | | | | | | \------------------------- maker-scaffold01582-snap-gene-0.43-mRNA-1/48-86 (21) | | | | | | /-------- maker-scaffold05977-snap-gene-0.21-mRNA-1/56-91 (22) | | | /---51---+ | | | | \-------- maker-scaffold06042-snap-gene-0.11-mRNA-1/31-116 (41) | | | /---83--+ | | | | \----------------- maker-scaffold04666-snap-gene-0.8-mRNA-1/21-105 (57) | | | | | | |---93--+ /-------- maker-scaffold01502-snap-gene-0.37-mRNA-1/20-60 (66) | | | | /---62---+ | | | | | \-------- maker-scaffold16046-snap-gene-0.1-mRNA-1/50-125 (68) | | | \---96--+ | | | \----------------- maker-scaffold05870-snap-gene-0.15-mRNA-1/29-114 (71) | | | \---97--+ \--------------------------------- maker-scaffold09962-snap-gene-0.16-mRNA-1/51-86 (31) | | /-------- maker-scaffold16569-snap-gene-0.4-mRNA-1/69-155 (6) |------------------------100-----------------------+ | \-------- maker-scaffold00580-snap-gene-0.34-mRNA-1/18-89 (64) | | /----------------- maker-scaffold00160-snap-gene-1.16-mRNA-1/82-138 (8) | | | /---83--+ /-------- maker-scaffold14328-snap-gene-0.0-mRNA-1/3-40 (56) | | \---96---+ | /--100--+ \-------- maker-scaffold01044-snap-gene-0.26-mRNA-1/58-131 (62) | | | | | \------------------------- maker-scaffold00403-snap-gene-0.30-mRNA-1/35-90 (43) | /---77---+ | | | /-------- augustus_masked-scaffold00096-abinit-gene-1.0-mRNA-1/2-43 (26) | | \-----------98-----------+ | /---90--+ \-------- maker-scaffold01299-snap-gene-0.24-mRNA-1/62-155 (58) | | | | | | /-------- maker-scaffold00020-augustus-gene-1.52-mRNA-1/72-163 (39) | | \---------------100---------------+ | | \-------- maker-scaffold01972-augustus-gene-0.27-mRNA-1/68-159 (42) |---55---+ | | /-------- maker-scaffold14382-augustus-gene-0.8-mRNA-1/60-146 (13) | |--------------------99-------------------+ | | \-------- maker-scaffold01051-snap-gene-0.46-mRNA-1/70-129 (69) | | | \-------------------------------------------------- augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1/163-233 (17) | | /-------- maker-scaffold00029-augustus-gene-0.34-mRNA-1/66-152 (10) | /-------72-------+ | | \-------- maker-scaffold08668-snap-gene-0.14-mRNA-1/72-180 (52) | | |---------------100---------------+ /-------- maker-scaffold00029-snap-gene-0.40-mRNA-1/64-151 (27) | | /---98---+ | | | \-------- maker-scaffold00029-augustus-gene-1.37-mRNA-2/89-191 (51) | \---55--+ | \----------------- maker-scaffold12279-snap-gene-0.4-mRNA-1/54-139 (40) | | /-------- maker-scaffold09066-snap-gene-0.12-mRNA-1/44-121 (14) | /---99---+ | | \-------- maker-scaffold02284-snap-gene-0.34-mRNA-1/71-159 (70) | /---99--+ | | | /-------- augustus_masked-scaffold01133-abinit-gene-0.3-mRNA-1/3-74 (24) | | \---95---+ | /---91--+ \-------- snap_masked-scaffold04457-abinit-gene-0.10-mRNA-1/12-100 (45) | | | | | \------------------------- maker-scaffold01133-snap-gene-0.29-mRNA-1/18-105 (65) |------------97-----------+ | | /-------- maker-scaffold00365-snap-gene-0.42-mRNA-1/103-190 (33) | \-----------100----------+ | \-------- maker-scaffold01639-snap-gene-0.21-mRNA-1/94-183 (59) | |----------------------------------------------------------- maker-scaffold02961-snap-gene-0.25-mRNA-1/26-67 (25) | | /-------- maker-scaffold02284-snap-gene-0.34-mRNA-1/506-596 (29) | /---100--+ | | \-------- augustus_masked-scaffold01133-abinit-gene-0.2-mRNA-1/78-168 (53) | /---51--+ | | \----------------- maker-scaffold02284-snap-gene-0.34-mRNA-1/278-369 (50) |----------------99---------------+ | \------------------------- maker-scaffold03433-augustus-gene-0.19-mRNA-1/82-172 (37) | |----------------------------------------------------------- maker-scaffold00965-augustus-gene-0.44-mRNA-1/77-168 (35) | |----------------------------------------------------------- maker-scaffold00285-augustus-gene-0.37-mRNA-1/84-171 (47) | | /-------- maker-scaffold06874-snap-gene-0.7-mRNA-1/198-271 (49) \------------------------96------------------------+ \-------- maker-scaffold06874-snap-gene-0.7-mRNA-1/44-118 (63) |