PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03433-augustus-gene-0.19-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 268aa MW: 30384.5 Da PI: 4.7724

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03433-augustus-gene-0.19-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	7.9e-26	82	172	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCk 63 +fY +YAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ +++ +++ +r+ tr gCk maker-scaffold03433-augustus-gene-0.19-mRNA-1 82 DFYYDYAKHMGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTLrNDRVLPPRPITREGCK 145 6***************************************9988723444459***** PP FAR1 64 aklkvkkekdgkwevtkleleHnHela 90 a++++ ++ g w+vtk++ eHnH+l+ maker-scaffold03433-augustus-gene-0.19-mRNA-1 146 AMIRLAARDGGIWVVTKFVREHNHKLM 172 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-23	82	172	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAGIAGIDDF LDGDGGFDDE IVENSGECDE ATEDGLLQHC NLNSVVINDH LGMIERSEEG 60 LSAEILEPCI GMTFSSLDGA RDFYYDYAKH MGFTIRTNRI RHSLKNMAII GRDFVCSREG 120 FRAAKHTLRN DRVLPPRPIT REGCKAMIRL AARDGGIWVV TKFVREHNHK LMTHCNFPGE 180 LPTVNILSEA VLETVLLDAV VSYASDQEEK DKKIKDLYDE LQYERERTAT FRQQLCVILK 240 DLEEHAQFMT LRVEDIVNSM KKIELGDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023892818.1	1e-173	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4DG74	1e-136	A0A2I4DG74_JUGRE; protein FAR1-RELATED SEQUENCE 7-like
STRING	cassava4.1_014884m	1e-122	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15728	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-40	FAR1 family protein