PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03734-snap-gene-0.30-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 195aa MW: 22415.3 Da PI: 8.3246 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.1 | 7.9e-10 | 8 | 46 | 51 | 90 |
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ ++ +trtgC+a+++ + + +g+w+vt+++ HnHela maker-scaffold03734-snap-gene-0.30-mRNA-1 8 KKFKKLQTRTGCEASIRFTVT-NGEWKVTHFNPTHNHELA 46 5668899*************9.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-7 | 8 | 46 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MFDNLGDKKF KKLQTRTGCE ASIRFTVTNG EWKVTHFNPT HNHELAKPEE RPFLRSNQKI 60 TDAQLGVIKT SKEAGIRTIS AYSYLVEEAG GMKASSRSES VNNFFQHMAC KTMRLTEFVH 120 EYEKTSKNMR VEELEEDFRC KQGTSSQIVK NCGLLEHALS VYTRTFFKRF KLEIASTLGV 180 THQDVYSDGE SFTYE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874110.1 | 3e-61 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
Refseq | XP_023879959.1 | 7e-63 | protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-11 | FAR1-related sequence 5 |