PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02284-snap-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 683aa    MW: 79611.8 Da    PI: 7.9266
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02284-snap-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.86.7e-2771159290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                fY+eYAk+ GF +r+ +s+ks+r+g+i++r++ C+keg++ +++++ + + r+r+++r gC a++ vk
  maker-scaffold02284-snap-gene-0.34-mRNA-1  71 FYDEYAKRQGFLTRIVSSRKSERDGSIISRRLACNKEGFNVNSQRRGQVRIRKRESKREGCMAMFLVK 138
                                                9*********************************************99999***************** PP

                                       FAR1  70 kekdgkwevtkleleHnHela 90 
                                                +ek g+w+vtk++ +HnH+l+
  maker-scaffold02284-snap-gene-0.34-mRNA-1 139 REKPGRWVVTKFVRDHNHPLV 159
                                                *******************96 PP
2FAR185.11.1e-26278369191
                                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkakl 66 
                                                +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r ++ +++ek+    +r+ tr gC+a++
  maker-scaffold02284-snap-gene-0.34-mRNA-1 278 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRIKKYENREKR-VlpSRPATREGCNAMM 344
                                                6****************************************9999983333.24599*********** PP

                                       FAR1  67 kvkkekdgkwevtkleleHnHelap 91 
                                                ++  ++ gkw v+ +++eHnHel+p
  maker-scaffold02284-snap-gene-0.34-mRNA-1 345 RIAAKDGGKWAVYGFVQEHNHELNP 369
                                                **********************975 PP
3FAR182.47.7e-26506596190
                                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkakl 66 
                                                +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++   ++++    + ++tr gC+a++
  maker-scaffold02284-snap-gene-0.34-mRNA-1 506 EFYVTYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPVTREGCQAMI 572
                                                6******************************************99883333.234899********** PP

                                       FAR1  67 kvkkekdgkwevtkleleHnHela 90 
                                                ++ +++  kw+vtk+++eHnH+l+
  maker-scaffold02284-snap-gene-0.34-mRNA-1 573 RLALRDGVKWVVTKFVKEHNHKLM 596
                                                **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2471159IPR004330FAR1 DNA binding domain
PfamPF031012.2E-23278369IPR004330FAR1 DNA binding domain
PfamPF031011.1E-22506596IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MFVTSFTRAT RLSLYEVLTW TPRMDTEPLA EDKNVIADSS IGGDSGIYEV DANQEPYEGM  60
LFESEEAAKA FYDEYAKRQG FLTRIVSSRK SERDGSIISR RLACNKEGFN VNSQRRGQVR  120
IRKRESKREG CMAMFLVKRE KPGRWVVTKF VRDHNHPLVI SSEKGRPTPD EKDRRIRELS  180
SELHRANQHL AACREQLRTF MTYVEEHTEC LSRTVEDVVH RIREVESKDQ KPTDDELSDN  240
LDGTDNIIQP SLQAFSLTSE PLEPFIGMEF ESAEDAREFY EMYGRRMGFT IRNNRTRRSL  300
KDNSIIGREF VCSKEGFRIK KYENREKRVL PSRPATREGC NAMMRIAAKD GGKWAVYGFV  360
QEHNHELNPS KIPPRRSHRL AFSEDEKDLK IRELTTELHR EKKKSAAYQQ QLQLVLKYVE  420
EYTQRLRMMD NEPHQGFDLD DSDLDMQAET YEKHGRIEDG LPNNLKLCVG EDDRVSDQSV  480
GDLPMNAEAL EPYIGMEFNS RDEAREFYVT YGRRTGFTVR IHHNRRSRVN NQVIGQDFVC  540
SKEGFRAKKY VYRKDRVLPP PPVTREGCQA MIRLALRDGV KWVVTKFVKE HNHKLMSPSK  600
VPWRGSGKHL VSEDEKDKRI RELSLELYNE KQKCKRRCAA YEEQLNMILK DLEQHTEHIS  660
KKVADIVQSI KDIEEEQSEA DSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892201.11e-176protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA5BNB50.0A5BNB5_VITVI; Uncharacterized protein
STRINGcassava4.1_014469m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-53FAR1 family protein