PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00029-snap-gene-0.40-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 414aa MW: 46833.4 Da PI: 6.3994

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00029-snap-gene-0.40-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.9	3.4e-28	64	151	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++v maker-scaffold00029-snap-gene-0.40-mRNA-1 64 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKASMHV 128 5**************************************999888...7788889******* PP FAR1 69 kkekdgkwevtkleleHnHelap 91 k++ dgkw ++++ +eHnHel p maker-scaffold00029-snap-gene-0.40-mRNA-1 129 KRRADGKWIIHEFIKEHNHELLP 151 ******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-25	64	151	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MVDCQDNVLS ARVNENMGNF VDEVHNRDVG VVSSPKRDVT MFEGDTDFEP RNGIEFESHE 60 AAYSFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDSG SSRRPSVKKT 120 DCKASMHVKR RADGKWIIHE FIKEHNHELL PALAYHFRIH RNVKLAEKNN IDILHAVSER 180 TRKMYVEMSR QSVEVLGVVG CHPKKESEDG TITTFRVQDC EKDEYFMVLW NETRAIELSE 240 EGSLSEESYS ISFRALVEAL KNCVNVNNIT FSAAESSGNA LVLREEEESR GSLGAKTSKK 300 KSTYKKRKVP AEPDVLLVEP QDSLQQMDNL SSDGMTLTGY YGAQQNVQGL LNLMEPPHDG 360 YYVNQHSIQG LGQLNSIAPS HDGFFGTQQS IHGLGQLDFR PPANFSYSLQ TWFY

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MVDCQDNVLS ARVNENMGNF VDEVHNRDVG VVSSPKRDVT MFEGDTDFEP RNGIEFESHE  60
AAYSFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDSG SSRRPSVKKT  120
DCKASMHVKR RADGKWIIHE FIKEHNHELL PALAYHFRIH RNVKLAEKNN IDILHAVSER  180
TRKMYVEMSR QSVEVLGVVG CHPKKESEDG TITTFRVQDC EKDEYFMVLW NETRAIELSE  240
EGSLSEESYS ISFRALVEAL KNCVNVNNIT FSAAESSGNA LVLREEEESR GSLGAKTSKK  300
KSTYKKRKVP AEPDVLLVEP QDSLQQMDNL SSDGMTLTGY YGAQQNVQGL LNLMEPPHDG  360
YYVNQHSIQG LGQLNSIAPS HDGFFGTQQS IHGLGQLDFR PPANFSYSLQ TWFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447822	1e-158	AM447822.2 Vitis vinifera contig VV78X040981.18, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635512.1	1e-165	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	8e-86	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A444XVD9	1e-176	A0A444XVD9_ARAHY; Uncharacterized protein
TrEMBL	A0A445BF52	1e-176	A0A445BF52_ARAHY; Uncharacterized protein
STRING	XP_008229655.1	1e-108	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-78	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]