PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09962-snap-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 307aa    MW: 35707.8 Da    PI: 9.1279
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09962-snap-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1349.4e-1151865490
                                       FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                                               +++etrtgCka++k + e +g+w+vt+++++HnHela
  maker-scaffold09962-snap-gene-0.16-mRNA-1 51 SKNETRTGCKASIKFTIE-NGEWKVTSFNSKHNHELA 86
                                               5789*************9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-85286IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.878271307IPR007527Zinc finger, SWIM-type
PfamPF044345.9E-7281304IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-4282306IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRDSFMIVNH EGQSENLLGM VVNSEEEAYK LYNKYAMQIG FSIRKNKIIY SKNETRTGCK  60
ASIKFTIENG EWKVTSFNSK HNHELAKAEQ RQFLRSNRKI TDAYVGGARL RYKAEFNSCW  120
DGLIRDYNLA GDKWLRSLYE ICEKWRPVFS LNIFSAKMKA SSRSESTNNV FHNMTFKTMS  180
LTKFVLHYET TGKKMREEEL EEDFRCNQGA PPKIVQHSGI LRHAASIYTR KTFYLFELEF  240
ASTLGVKIEE VNHDGDLHTF ALIEEDHQRV RTVQFNSLDN VVTCSCKMFE SLGLLCRHAL  300
RVINVKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412974.13e-75protein FAR1-RELATED SEQUENCE 5
RefseqXP_020422922.13e-75protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A251NIG22e-73A0A251NIG2_PRUPE; Uncharacterized protein
TrEMBLA0A251QFY53e-73A0A251QFY5_PRUPE; Uncharacterized protein
TrEMBLM5WL036e-74M5WL03_PRUPE; Uncharacterized protein (Fragment)
TrEMBLM5X4778e-74M5X477_PRUPE; Uncharacterized protein
STRINGEMJ099431e-74(Prunus persica)
STRINGEMJ207291e-74(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-29FAR1-related sequence 5