PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01133-snap-gene-0.29-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 187aa MW: 21982.4 Da PI: 10.6239

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01133-snap-gene-0.29-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99	5.2e-31	18	105	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + k+ +++r++ra tr gCka+++vk maker-scaffold01133-snap-gene-0.29-mRNA-1 18 FYDAYATRMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPKR-SENRKPRAITREGCKAMIVVK 84 9*****************************************99.9**************** PP FAR1 70 kekdgkwevtkleleHnHela 90 kek+gkw+vt++++eHnH+l+ maker-scaffold01133-snap-gene-0.29-mRNA-1 85 KEKTGKWVVTRFVKEHNHPLV 105 *****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-29	18	105	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEPYVGMDFE SEEAAKVFYD AYATRMGFIM RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR 60 PKRSENRKPR AITREGCKAM IVVKKEKTGK WVVTRFVKEH NHPLVVTPAN GRRSVLLSQT 120 PDEKDVKIRE LTAELQRERK RSAAFQEQLD MVLRDMEDHS HHLSRNIDDI VQSVREIESK 180 RLALSHS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023885192.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_023885194.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_023913236.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_023913238.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like isoform X3
Swissprot	Q9SZL8	9e-31	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2N9I081	1e-132	A0A2N9I081_FAGSY; Uncharacterized protein
STRING	XP_006492211.1	1e-126	(Citrus sinensis)
STRING	XP_006447969.1	1e-126	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-93	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]