PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02961-snap-gene-0.25-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 272aa MW: 30614.3 Da PI: 7.5818

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02961-snap-gene-0.25-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.7	7.4e-08	26	67	50	91
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + + +++ +r+gC a++ +++kdg ev ++ ++HnHe++p maker-scaffold02961-snap-gene-0.25-mRNA-1 26 HVSFHHPISRIGCLAQMSCQLQKDGMLEVVSFYEQHNHEFTP 67 455578899******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-5	25	67	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.297	130	162	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-4	134	161	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-5	137	164	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
EEPQVKPIDG SANTPSEQAI DKHCEHVSFH HPISRIGCLA QMSCQLQKDG MLEVVSFYEQ 60 HNHEFTPSPM KHILRSNKKI TPAQHAFADD AKKFGVSIKQ TIDLLSMQVG GYENLGVKYR 120 NKTQEHLVKY EASTMTVQCS CMKFSFLGIL CSHAFSVLDK KNVKRILAHY VLKRWTQYAN 180 VGSAQESVGK HLSHLSHKCL QINTLAVEKE MMYEHVDKCF DKLLKDLLEM RIKCCLSSME 240 GEVHGEVVPK NVLQGDGGFE SHVDISQGIC GI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP855753	4e-73	KP855753.1 Quercus variabilis microsatellite Qv1713 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023875960.1	3e-93	protein FAR1-RELATED SEQUENCE 9-like
Refseq	XP_023888589.1	3e-88	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9IGX4	8e-55	A0A2N9IGX4_FAGSY; Uncharacterized protein
TrEMBL	A0A2N9IKA5	3e-54	A0A2N9IKA5_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16859	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-11	FAR1-related sequence 5