PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold11982-snap-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 458aa MW: 53786.4 Da PI: 4.9155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold11982-snap-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.5	2e-22	101	185	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 ++Yn YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC a+++++ maker-scaffold11982-snap-gene-0.6-mRNA-1 101 NYYNCYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMIKEAN-----SRRKETRTGCLAMIRLR 164 69**************************************98887.....8999********* PP FAR1 70 kekdgkwevtkleleHnHela 90 + ++++w+v++++leHnH++ maker-scaffold11982-snap-gene-0.6-mRNA-1 165 LVESNRWRVDEVKLEHNHSFD 185 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-20	101	185	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.027	340	376	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-5	351	378	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MVCFLYQIEE GSQNSDQLLE HDGDLENDHE TEQLFEIDGD DHEGNDLENE CEQLFEIEGN 60 DLETDRDDTT IVDFQNGISE RKDYPPPVVG MEFESYDDAY NYYNCYAREL GFAIRVKSSW 120 TKRNSKEKRG AVLCCNCEGF KMIKEANSRR KETRTGCLAM IRLRLVESNR WRVDEVKLEH 180 NHSFDPERAQ NSKSHKKMVI GDKRKLEPTV DVEVRTIKLY RTPVVDAMGY GSSNSNEGEA 240 NNHFDQFFHM YEIVLQKKHQ KEALDDLESR DSSDILKTSC YYELQLSKLY TKEIFQKFQD 300 EVVMMSSCFN ITQAHTNGPV VTYMVKERDG EEILRDVRNF EVMYDKATAE VRCICSCFNF 360 KGYLCRHALC VLTYNGLEEI PFQYILSRWR KDFKRLYVPD LGSNNVDITN PVQWFDHLYR 420 RAMQVVEEGM ISQDHYMVAW QAFKESLNKV RLVAEKHM

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MVCFLYQIEE GSQNSDQLLE HDGDLENDHE TEQLFEIDGD DHEGNDLENE CEQLFEIEGN  60
DLETDRDDTT IVDFQNGISE RKDYPPPVVG MEFESYDDAY NYYNCYAREL GFAIRVKSSW  120
TKRNSKEKRG AVLCCNCEGF KMIKEANSRR KETRTGCLAM IRLRLVESNR WRVDEVKLEH  180
NHSFDPERAQ NSKSHKKMVI GDKRKLEPTV DVEVRTIKLY RTPVVDAMGY GSSNSNEGEA  240
NNHFDQFFHM YEIVLQKKHQ KEALDDLESR DSSDILKTSC YYELQLSKLY TKEIFQKFQD  300
EVVMMSSCFN ITQAHTNGPV VTYMVKERDG EEILRDVRNF EVMYDKATAE VRCICSCFNF  360
KGYLCRHALC VLTYNGLEEI PFQYILSRWR KDFKRLYVPD LGSNNVDITN PVQWFDHLYR  420
RAMQVVEEGM ISQDHYMVAW QAFKESLNKV RLVAEKHM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879503.1	1e-167	protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9SSQ4	3e-76	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A445DIY1	0.0	A0A445DIY1_ARAHY; Uncharacterized protein
STRING	XP_008228720.1	1e-125	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-78	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]