PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold24012-snap-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 463aa MW: 53574.6 Da PI: 8.2598

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold24012-snap-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	68	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 +Yn+YA++ GFs+++++++k+ +++ + ++vCskeg+r++e+ +etr+gCka++ +kk maker-scaffold24012-snap-gene-0.1-mRNA-1 68 YYNAYARRKGFSIQVNHTRKN-KDKIRVGIEYVCSKEGFRRPER----------VETRVGCKAMIGLKK 125 8**************9999.66668999******9975..........56********* PP FAR1 71 ekdgkwevtkleleHnHela 90 d++w v k+++ HnHel maker-scaffold24012-snap-gene-0.1-mRNA-1 126 V-DDTWIVCKFVESHNHELL 144 9.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-16	68	144	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	6.5E-6	234	265	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.559	234	270	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSANNKVPEI VSLCDMVDDL VHDESEINED QNNVDLSLDD SNQPFACNRH SEPHLDMVFE 60 NLEIVHAYYN AYARRKGFSI QVNHTRKNKD KIRVGIEYVC SKEGFRRPER VETRVGCKAM 120 IGLKKVDDTW IVCKFVESHN HELLTPKSTS LLRGHRVITS AQKNLIDTLN ESVPILKTCY 180 KLEAEAAKVY TRKMFMKFQE ELFCSKKYKA SKYHEEGVKK IYKVVAHGRE SPFYEVYLDI 240 VETKAICTCH MFEFVGIICR HILVVSVKKS LVHFLPSHYI LERWTINAKK HIMHDISSDV 300 VQVEPQVSST MMRNSLMLQF LEVVEVGSQS EKQYKHLRQT LRKVHEQLLA MQDVQDVDDL 360 GSPDNTILNS QVLSNLPMTL RDPPHVPSKG RPKALRQKHP KEKQLMKKRK CSICKETGHY 420 LNFVVYKLTS CMDVANTSWT PHSESVHQQQ SQTEDPLQQF QES

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSANNKVPEI VSLCDMVDDL VHDESEINED QNNVDLSLDD SNQPFACNRH SEPHLDMVFE  60
NLEIVHAYYN AYARRKGFSI QVNHTRKNKD KIRVGIEYVC SKEGFRRPER VETRVGCKAM  120
IGLKKVDDTW IVCKFVESHN HELLTPKSTS LLRGHRVITS AQKNLIDTLN ESVPILKTCY  180
KLEAEAAKVY TRKMFMKFQE ELFCSKKYKA SKYHEEGVKK IYKVVAHGRE SPFYEVYLDI  240
VETKAICTCH MFEFVGIICR HILVVSVKKS LVHFLPSHYI LERWTINAKK HIMHDISSDV  300
VQVEPQVSST MMRNSLMLQF LEVVEVGSQS EKQYKHLRQT LRKVHEQLLA MQDVQDVDDL  360
GSPDNTILNS QVLSNLPMTL RDPPHVPSKG RPKALRQKHP KEKQLMKKRK CSICKETGHY  420
LNFVVYKLTS CMDVANTSWT PHSESVHQQQ SQTEDPLQQF QES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879877.1	1e-123	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A022RKY7	2e-87	A0A022RKY7_ERYGU; Uncharacterized protein
STRING	Migut.G01329.1.p	1e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14634	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-29	FAR1-related sequence 5