PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01044-snap-gene-0.26-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 236aa MW: 28043.8 Da PI: 9.554 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.5 | 1.4e-10 | 58 | 131 | 22 | 90 |
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtklele 84 +++ngei +++f ++eg++ + + +ke+r+r++ ++gCka+l++ ++k ++w+vt ++ + maker-scaffold01044-snap-gene-0.26-mRNA-1 58 REKNGEIGRHNFFYYREGRQPLKMVDPSKEQRNRKSLKCGCKAHLTIVLRKsidifPKEWHVTIFVVD 125 368999******************999********************99887766679********** PP FAR1 85 HnHela 90 Hn el maker-scaffold01044-snap-gene-0.26-mRNA-1 126 HNYELL 131 **9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-8 | 58 | 131 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MENECPIDET GVIEEYEDIN LIENEFEPFV VFLVKKKFSF SIKIMRIKMV LQFEKVVREK 60 NGEIGRHNFF YYREGRQPLK MVDPSKEQRN RKSLKCGCKA HLTIVLRKSI DIFPKEWHVT 120 IFVVDHNYEL LSLSSVRFLS ANQVNTKDDK NCILLYKKAG LSIGEIIHVM ELKKNVKYGH 180 LPFFQRDIRN LYVKMRKMYV VNDVMDLSQF CKVAKEKNSK FQYAFTTDDE KRILHV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622071.1 | 8e-59 | protein FAR1-RELATED SEQUENCE 11-like isoform X4 | ||||
TrEMBL | A0A072UI16 | 2e-58 | A0A072UI16_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES62383 | 7e-56 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15165 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 7e-34 | FAR1-related sequence 11 |