PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00020-augustus-gene-1.52-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 692aa    MW: 79743.6 Da    PI: 6.5745
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00020-augustus-gene-1.52-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.65.1e-2472163190
                                           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 
                                                    ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+a
  maker-scaffold00020-augustus-gene-1.52-mRNA-1  72 EYYSNFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDA 134
                                                    69********************8888.************************************* PP

                                           FAR1  65 klkvkkek...dgkwevtkleleHnHela 90 
                                                    kl ++ke      +w+v+++++ HnHel 
  maker-scaffold00020-augustus-gene-1.52-mRNA-1 135 KLYLSKEIidnVTQWYVSQFSNVHNHELL 163
                                                    *****997766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-2272163IPR004330FAR1 DNA binding domain
PfamPF105513.3E-20295388IPR018289MULE transposase domain
PROSITE profilePS5096610.002565601IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5569598IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQSSVNSQLV KSETTASSSS SSEAVFTPYV  60
GQIFKSDDDA FEYYSNFARK NGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE  120
HPRDRKSVRC GCDAKLYLSK EIIDNVTQWY VSQFSNVHNH ELLEDDQVRL LPAYRKIQEA  180
DQERILLLSK AGFPVNRIVK VLELEKGVQP GQLPFIEKDV RNFVRTCKKT VQENDALLSE  240
KRENDMMELV EACKAMVERD PDFLYDCTTD ENGKVENIAW TFGDSVRAYT VFGDVVTFDT  300
TYRSITYGLL LGVWFGIDSH GKAIFFGSVL LQEENSHSFA WALQTFVRFM RGRRPQTILT  360
DIDSGLRDAI ARELPNTKHV ISTSHILSKL SSWFSLPLGS QYADFKADFD MLCHLESVED  420
FEHQWNLLVA RFGLVPDKHI ALLFSYRASW PLSYIRSYFL AHMLTAEFSQ SLDSFLKRIL  480
SAHTCLQVFF EQVGIAANLQ NQPRVLQSMH IKTCMPIEEH ARSILTPYAF NVLQHEIVLS  540
MEYATTEMAN GSYLVRHYKK MDGEYLVIWI PDGEQIHCSC KEFEHSGMLC RHSLRVLVVK  600
NYFELPEKYC LHRWRLESSL VPMDDQHAQS SSDECTQAFH SLAATLLTES LISKERFNYV  660
HRELTGLLEH VRNMPVIDEF ALNIAANNVS ES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874105.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_023874106.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2N9IHM60.0A0A2N9IHM6_FAGSY; Uncharacterized protein
STRINGEOY051780.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]