PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold04457-abinit-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 115aa MW: 13510.7 Da PI: 10.5935 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.7 | 1.7e-27 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtg 61 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr g snap_masked-scaffold04457-abinit-gene-0.10-mRNA-1 12 FYDEYARRLGFVMRVMSCRRSERDGKILARRLGCNKEGHCVSIRGKFGPVRKPRPSTREG 71 9**************************************99999998************* PP FAR1 62 CkaklkvkkekdgkwevtkleleHnHela 90 Cka+++vk +k+gkw++tk++++HnH+l+ snap_masked-scaffold04457-abinit-gene-0.10-mRNA-1 72 CKAMIHVKYDKSGKWVITKFVKDHNHPLV 100 ***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.7E-25 | 12 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MEFESEDSAK IFYDEYARRL GFVMRVMSCR RSERDGKILA RRLGCNKEGH CVSIRGKFGP 60 VRKPRPSTRE GCKAMIHVKY DKSGKWVITK FVKDHNHPLV VSPREARQTM KNWEH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892029.1 | 3e-78 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 3e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2I4HVM5 | 2e-75 | A0A2I4HVM5_JUGRE; protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | XP_008222477.1 | 8e-75 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 7e-73 | FAR1 family protein |
Publications ? help Back to Top | |||
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