PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04666-snap-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 140aa MW: 16302.4 Da PI: 9.3836 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.6 | 1.5e-16 | 21 | 105 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 YneY + Fs+rk ++k +g +r++ Csk+g++e e+ + ++ ++ trtgC+a+++ + maker-scaffold04666-snap-gene-0.8-mRNA-1 21 LYNEYTLNKRFSMRKGVTRKI--DGVLRQREYLCSKQGYKEFEDPC-DYKKYNKLDTRTGCHARIRFHI 86 7***************98887..******************99988.89999****************9 PP FAR1 71 ekdgkwevtkleleHnHela 90 + +g w v++++ e nHe+a maker-scaffold04666-snap-gene-0.8-mRNA-1 87 K-NGIWTVSHFNDERNHEFA 105 9.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-13 | 21 | 105 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MDFLENSLDT TADNDKKAYN LYNEYTLNKR FSMRKGVTRK IDGVLRQREY LCSKQGYKEF 60 EDPCDYKKYN KLDTRTGCHA RIRFHIKNGI WTVSHFNDER NHEFASPKEK CNLKSGSTVL 120 STHGTIIETM VSSCIKATKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023925132.1 | 3e-53 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9F5N9 | 3e-50 | A0A2N9F5N9_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 2e-09 | FAR1-related sequence 12 |