PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00160-snap-gene-1.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 292aa    MW: 34232.1 Da    PI: 9.5292
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00160-snap-gene-1.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.61.7e-0782138260
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 
                                                 Y++YA++ GF++rk +  ++  nge ++r f   +eg+++ ++ +++ke+r+r +tr 
  maker-scaffold00160-snap-gene-1.16-mRNA-1  82 LYKNYANRYGFTIRKCHFVTK--NGENVRRVFFYHREGRQQLKRVDSSKEQRNRISTRL 138
                                                5**************998777..89999***************999999999*999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-582137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNDIVITSEI YQSVSRNCVD LNELPNDGEN NDICGEEIVV WNEYPMEEIG VIEENEDINS  60
IENEFEPFFG QCFLREEEAF ILYKNYANRY GFTIRKCHFV TKNGENVRRV FFYHREGRQQ  120
LKRVDSSKEQ RNRISTRLRF LPANRVITKE DKDRILLLKK GGLLVRKIIR VMELKKGVKH  180
GDLPFFKRDI HNLYTFANLM KKSLKTILTD QNPWITEAIS KELPYTKHDF SIWHITAKFS  240
GWLTAILRSQ YSNCLSHTYS DKASGTGPKK KNAMTQARAI TYTNRNCGLK RN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630748.11e-59protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A2U1PBC92e-54A0A2U1PBC9_ARTAN; FAR1 DNA-binding domain protein
STRINGXP_010689388.12e-37(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.18e-19FAR1-related sequence 11