PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold14328-snap-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 201aa MW: 24018.6 Da PI: 6.7326 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.2 | 4.6e-07 | 3 | 40 | 58 | 90 |
FAR1 58 trtgCkaklkvkkek.....dgkwevtkleleHnHela 90 ++gCka+l + ++k w+vtk++ +HnH+l+ maker-scaffold14328-snap-gene-0.0-mRNA-1 3 LKCGCKAHLSIILRKsfdvfPRDWHVTKFVVDHNHDLF 40 58********9988766566689*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.4E-5 | 3 | 40 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
ESLKCGCKAH LSIILRKSFD VFPRDWHVTK FVVDHNHDLF SPSETILTDQ DSWITKAISK 60 ELLATKHAFF IWHITTKFSS WFTSIHQNQY SNWCMGFYKL YKLESCEDFD NQWFQVMTKY 120 DMLFNKHVIG LYQIKNFWVP CYLRDHFFGG MTTTGILESI NTFIKWFVSF HINLIQLIKQ 180 VDLTIEDIEQ TQSHDTMLET Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630748.1 | 2e-72 | protein FAR1-RELATED SEQUENCE 11-like | ||||
TrEMBL | A0A2U1PBC9 | 1e-74 | A0A2U1PBC9_ARTAN; FAR1 DNA-binding domain protein | ||||
STRING | AES74601 | 7e-61 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 4e-34 | FAR1-related sequence 11 |