PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold10008-snap-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 353aa MW: 41646.1 Da PI: 9.6723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold10008-snap-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.1	9.4e-16	27	100	2	77
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 Yn+YA ++GFs+rk k k+ +++++i++++f Cskeg++ +e+ +++ ++r etrt C+a+++ + maker-scaffold10008-snap-gene-0.10-mRNA-1 27 LYNDYAMRMGFSIRKGKPKYYNETKNIKQSEFLCSKEGFKLDEDFF-KEKYSKRLETRTCCRASVRFT 93 6******************9*****************999.99999*************9 PP FAR1 70 kekdgkwe 77 + +g+w+ maker-scaffold10008-snap-gene-0.10-mRNA-1 94 IK-NGVWR 100 98.88886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-13	27	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MFVARLENSD ENLLNKVVHN ANEAYALYND YAMRMGFSIR KGKPKYYNET KNIKQSEFLC 60 SKEGFKLDED FFKEKYSKRL ETRTCCRASV RFTIKNGVWR RHLLRSSRRI PKHKADTWDQ 120 MIQKFDIENY HWLNMMYKIQ HKWNTAFTKD FFTAEFKSSS RSESTNHFLN GMRSSELDED 180 FRCKQSAPHK AIKKSGILVL QWFGIKLITK IQLVFLRSKK KIVKEYALSY LIISIAIFLV 240 LIRNLSHWGF FVVMHCEAKK GMMTYKQDNH SLSNDEEAKI VWRNSMMQIA NTIISKSQGE 300 DSLTRICQKL LLELDEKIER ELSRVKFGVE ANVEENEIIQ CDTTDEMPCL PNG

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MFVARLENSD ENLLNKVVHN ANEAYALYND YAMRMGFSIR KGKPKYYNET KNIKQSEFLC  60
SKEGFKLDED FFKEKYSKRL ETRTCCRASV RFTIKNGVWR RHLLRSSRRI PKHKADTWDQ  120
MIQKFDIENY HWLNMMYKIQ HKWNTAFTKD FFTAEFKSSS RSESTNHFLN GMRSSELDED  180
FRCKQSAPHK AIKKSGILVL QWFGIKLITK IQLVFLRSKK KIVKEYALSY LIISIAIFLV  240
LIRNLSHWGF FVVMHCEAKK GMMTYKQDNH SLSNDEEAKI VWRNSMMQIA NTIISKSQGE  300
DSLTRICQKL LLELDEKIER ELSRVKFGVE ANVEENEIIQ CDTTDEMPCL PNG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929269.1	1e-67	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9EUB3	9e-74	A0A2N9EUB3_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	5e-08	FAR1-related sequence 8