PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00096-abinit-gene-1.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 529aa MW: 60450.2 Da PI: 6.7402

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00096-abinit-gene-1.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.5	9.1e-08	2	43	52	90
FAR1 52 rrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +r+r+++r+gC+a l++ k+ +w+vt +++ HnHel augustus_masked-scaffold00096-abinit-gene-1.0-mRNA-1 2 QRNRKSSRCGCQAYLRIVKRAdfdLPEWRVTGFSNIHNHELL 43 689***********99887665679***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-5	2	43	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-7	139	176	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.582	310	358	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-6	332	356	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	333	360	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MQRNRKSSRC GCQAYLRIVK RADFDLPEWR VTGFSNIHNH ELLKPQQVRL LPAYCTISSD 60 DKSRICMFAK AGMSVRQMLR LLELEKGVKL GCLPFTEIDV RNLLQSFRNV DRDSDAIDLI 120 AMCKKLKDEN PYFNICGFMK GKAPQTILTD HNMWLKDAIA IEMPETKHAF CIWHIIAKFS 180 DWFSILLGSR YDDWKDEFHR LYNMEFVEDF EGMMGTCQSE SINAFIQRFM SAQSQLDNFV 240 EQVADIVDFN DRVGAKQKMQ RKLLKVCLKT GSPIESHAAT LLTPYAFSKL QEELVLAPQY 300 ASLLVDEGCF QVRHHTQIDG GCNVIWIPCQ EHISCSCHQF EFSGILCRHV LRVLSTNNCF 360 HIPDRYLPTR WRSVNSSCSN PFRTATTREH SERIQLLESM ASTLVTESIE TEERLDVACE 420 QMAMVLSRIK DLSRSTHSMN EIAYNCPSDS LILPEVEDAD GIVQSFTIGN PHDSITLGKL 480 KERRPRDGID TIRRRRHCPG PCCGHFGHDG STCSLIGDDD LHGDALGYL

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MQRNRKSSRC GCQAYLRIVK RADFDLPEWR VTGFSNIHNH ELLKPQQVRL LPAYCTISSD  60
DKSRICMFAK AGMSVRQMLR LLELEKGVKL GCLPFTEIDV RNLLQSFRNV DRDSDAIDLI  120
AMCKKLKDEN PYFNICGFMK GKAPQTILTD HNMWLKDAIA IEMPETKHAF CIWHIIAKFS  180
DWFSILLGSR YDDWKDEFHR LYNMEFVEDF EGMMGTCQSE SINAFIQRFM SAQSQLDNFV  240
EQVADIVDFN DRVGAKQKMQ RKLLKVCLKT GSPIESHAAT LLTPYAFSKL QEELVLAPQY  300
ASLLVDEGCF QVRHHTQIDG GCNVIWIPCQ EHISCSCHQF EFSGILCRHV LRVLSTNNCF  360
HIPDRYLPTR WRSVNSSCSN PFRTATTREH SERIQLLESM ASTLVTESIE TEERLDVACE  420
QMAMVLSRIK DLSRSTHSMN EIAYNCPSDS LILPEVEDAD GIVQSFTIGN PHDSITLGKL  480
KERRPRDGID TIRRRRHCPG PCCGHFGHDG STCSLIGDDD LHGDALGYL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023916849.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_023916864.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_023917064.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_023917074.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	1e-122	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0B2PUA0	0.0	A0A0B2PUA0_GLYSO; Protein FAR1-RELATED SEQUENCE 11
STRING	XP_007138969.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-124	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]