PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01582-snap-gene-0.43-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 24367.8 Da PI: 5.7151 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.1 | 2.3e-07 | 48 | 86 | 2 | 42 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 Yn+YA ++ Fsvrk+k ++ +ng + +r++vCsk+ ++e maker-scaffold01582-snap-gene-0.43-mRNA-1 48 LYNDYAIRIEFSVRKEKLRYA-KNG-VRQREYVCSKKDFHE 86 7****************9998.666.9*********98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-4 | 48 | 86 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTEVVAEIHT PPLQLTKIDQ DIRADEELQD IENLLGMVVH SEDEAYNLYN DYAIRIEFSV 60 RKEKLRYAKN GVRQREYVCS KKDFHEMMAI WMIRNSKDYK LGLVVKLVFE IEFQSCWDAL 120 LRDYNLVGNK WLSTLYENRE RWCSVFSYNI FSCRMKASSR SESTNNVFQH MACKTMRLTE 180 FVHEYEKASK SMRTEELEED FCCK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023917131.1 | 4e-57 | protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-12 | FAR1-related sequence 5 |