PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01972-augustus-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 610aa    MW: 70787 Da    PI: 6.7812
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01972-augustus-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1674.9e-2168159190
                                           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 
                                                    ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk   +++r r++ r+gC+a
  maker-scaffold01972-augustus-gene-0.27-mRNA-1  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKPIGEHHRDRKSVRCGCDA 130
                                                    59********************8888.************************************* PP

                                           FAR1  65 klkvkkek...dgkwevtkleleHnHela 90 
                                                    k+ ++ke     ++w v ++++ HnHel 
  maker-scaffold01972-augustus-gene-0.27-mRNA-1 131 KMYLSKEIvegVSQWFVVQFSNVHNHELL 159
                                                    *****998767889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-1968159IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.262481517IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-7489516IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-5492519IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MTSLPSKNIW IRRQQCPCGD WKCYVSYEGD AEETSIASQL VKNDIVPLES MVAPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAK KKPIGEHHRD  120
RKSVRCGCDA KMYLSKEIVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGHLP FLERDVRNFV QNRKKVVQEN DALLTEKREN  240
DTLELLEACK ATKETDEDFT FVRFMRGRCP QTILTDLDTG LIDAIRSELP NTKHVTSIWN  300
IVSKLPSWFS LLLGSRYAEF KSEFDVLYHV DTVDEFDLRW NQLLSMFGLG SDKHIALLFS  360
FRASWALSYM RGYFLARMAT TAYSKSVDSF LKGVFSAQTC LRSFFEQVGI SANFQNHAHL  420
AMQYMRIKTC IPIEDHARSI LTPFAFNALQ NELVMTMQYA TSEMANGSYI VRHFKKMDGE  480
YLVIWIPEDE QIHCSCKEFE SSGILCRHAL KILIVKNYFH LPDKYFLSRW RRESSPVIYE  540
DNCTQNGEDE WFQEYHCLTE TLFSESSITK ERSDYVRIEL TKELTRLLNE VRNLPEIDGV  600
AMDLTLSPTC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368884.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X4
SwissprotQ9LKR41e-117FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S3VLH90.0A0A1S3VLH9_VIGRR; Uncharacterized protein
STRINGXP_002530218.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-120FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]