PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04964-snap-gene-0.11-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 399aa MW: 46851.4 Da PI: 8.3424

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04964-snap-gene-0.11-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	48	134	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 Yn+YA ++GFs+rk k ++ + +++i +++f C keg++ +e+ ek++ ++ etrtg ka ++ + maker-scaffold04964-snap-gene-0.11-mRNA-1 48 LYNNYALQTGFSIRKGKPRYFNGTKNIRQHEFLCFKEGFKIDEDPC-EKKNWKKLETRTGYKAFIRFT 114 7*************************************999988.89999************** PP FAR1 70 kekdgkwevtkleleHnHela 90 e +++w+vt ++leHnHela maker-scaffold04964-snap-gene-0.11-mRNA-1 115 VE-NDVWRVTAFNLEHNHELA 134 9.9**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-18	48	134	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.914	284	320	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-6	294	317	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-4	295	322	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MFFIKIIVVC NSSDIEGIED CLFVERLENS EDNLLDKVAY TENEAYNLYN NYALQTGFSI 60 RKGKPRYFNG TKNIRQHEFL CFKEGFKIDE DPCEKKNWKK LETRTGYKAF IRFTVENDVW 120 RVTAFNLEHN HELALPSERH LLRSGHRISK PKAELEFQNT WDKMMHKFNL EDHHWLNMMY 180 KIRHKWSIAF TKDSFTAKFK ASSRSESTNH VLNNIADTTI SLTNFVIKYE SVLAGMRSAE 240 FNEDFRCKQG APQRAVKKSE WKQVDCQDTI DIFEVKEEDS QRVHIVHFDN FNSNIYCSCK 300 KYESLGILCC HALRVFNLKI LTKIPSQYIL KRWTKEAKKG MMAYEQDNHS SSNAKEAEIV 360 WHNSMLRIAN TIISKSQGDD SLKSICQKIL LGLDEKIER

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MFFIKIIVVC NSSDIEGIED CLFVERLENS EDNLLDKVAY TENEAYNLYN NYALQTGFSI  60
RKGKPRYFNG TKNIRQHEFL CFKEGFKIDE DPCEKKNWKK LETRTGYKAF IRFTVENDVW  120
RVTAFNLEHN HELALPSERH LLRSGHRISK PKAELEFQNT WDKMMHKFNL EDHHWLNMMY  180
KIRHKWSIAF TKDSFTAKFK ASSRSESTNH VLNNIADTTI SLTNFVIKYE SVLAGMRSAE  240
FNEDFRCKQG APQRAVKKSE WKQVDCQDTI DIFEVKEEDS QRVHIVHFDN FNSNIYCSCK  300
KYESLGILCC HALRVFNLKI LTKIPSQYIL KRWTKEAKKG MMAYEQDNHS SSNAKEAEIV  360
WHNSMLRIAN TIISKSQGDD SLKSICQKIL LGLDEKIER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023873391.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9ET88	1e-125	A0A2N9ET88_FAGSY; Uncharacterized protein
TrEMBL	A0A2N9FSL8	1e-130	A0A2N9FSL8_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-25	FAR1-related sequence 5