PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00090-snap-gene-1.53-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 122aa MW: 14427.4 Da PI: 9.6576 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.3 | 2.1e-12 | 27 | 96 | 2 | 72 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 Yn++A ++GF++rk k ++ + ++i++++f Cskeg++ +e +++ +r etrtgCk + +++ maker-scaffold00090-snap-gene-1.53-mRNA-1 27 LYNNFALRMGFNIRKGKPRYYNGMKNIKQHEFLCSKEGFKLDEIFC-KEKYLKRLETRTGCKWSTAFTED 95 6*******************9999******************9988.89999**********88777666 PP FAR1 72 k 72 maker-scaffold00090-snap-gene-1.53-mRNA-1 96 F 96 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-9 | 27 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MFVERLENSD DNFLNKVVHN AGEAYALYNN FALRMGFNIR KGKPRYYNGM KNIKQHEFLC 60 SKEGFKLDEI FCKEKYLKRL ETRTGCKWST AFTEDFFTTE FKSSWRSEST NHVLNGIAKK 120 NN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028060781.1 | 8e-40 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9ET88 | 6e-31 | A0A2N9ET88_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 7e-07 | FAR1-related sequence 8 |