PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00029-augustus-gene-0.34-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 537aa MW: 60609.2 Da PI: 7.0768

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00029-augustus-gene-0.34-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.9	3.3e-23	66	152	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++ ++++ ++r+ +t+Cka maker-scaffold00029-augustus-gene-0.34-mRNA-1 66 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRVSSST----VQPRPCLKTDCKA 125 5*************************************9998877....9******** PP FAR1 65 klkvkkekdgkwevtkleleHnHelap 91 +++k++ ++kw+v+++ +eHnH+++p maker-scaffold00029-augustus-gene-0.34-mRNA-1 126 GMHMKRTPEEKWVVHSFIKEHNHDICP 152 **********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-21	66	152	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.741	220	256	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-5	222	255	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-5	231	258	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MYVEEDDVNS PTTSEHVEEV FGPNANVSTV QNEVDVNAVG LNGVNKGVTC EPHNGLEFET 60 KEAAYSFYRE YARSVGFGIT IKASRRSKKS GKFIDIKIAC SRFGSKRVSS STVQPRPCLK 120 TDCKAGMHMK RTPEEKWVVH SFIKEHNHDI CPLDFYNSIR GHNKQPGIVA CQKKGLQLAL 180 DEGDVQFEVL GVVSCHSQEE REDNGTVIYR VDDFEERQNF VVAWNKAELD ICCLCHSFEY 240 RGFLCRHAIL VLQNCGLPNI PSHYILKRWT KDAKVRQPTS QISNGLHYRV LRFNDLCKRA 300 MRLVEEGSLS EETYSIAFQA LEEVLKHCVG VNNSVRSVLE PNTLAIHGFL DIEEENQNNS 360 MAKSSKKKKT FKKRKGRSEP DGVTIGIQES CQQMEQMSSR AHNLDNCYVP QQDMQGVELS 420 SRAPAFDEYF DAHQNINSVG QLNSNSPIHD DYFSNQQGLQ GLGQLHSLAT RVGQYGTQQS 480 MQGLLQAQLS FKAPVIHGCF DIQDNLQDML QSMASSQFHN IATKHLPSKH LSRQLER

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MYVEEDDVNS PTTSEHVEEV FGPNANVSTV QNEVDVNAVG LNGVNKGVTC EPHNGLEFET  60
KEAAYSFYRE YARSVGFGIT IKASRRSKKS GKFIDIKIAC SRFGSKRVSS STVQPRPCLK  120
TDCKAGMHMK RTPEEKWVVH SFIKEHNHDI CPLDFYNSIR GHNKQPGIVA CQKKGLQLAL  180
DEGDVQFEVL GVVSCHSQEE REDNGTVIYR VDDFEERQNF VVAWNKAELD ICCLCHSFEY  240
RGFLCRHAIL VLQNCGLPNI PSHYILKRWT KDAKVRQPTS QISNGLHYRV LRFNDLCKRA  300
MRLVEEGSLS EETYSIAFQA LEEVLKHCVG VNNSVRSVLE PNTLAIHGFL DIEEENQNNS  360
MAKSSKKKKT FKKRKGRSEP DGVTIGIQES CQQMEQMSSR AHNLDNCYVP QQDMQGVELS  420
SRAPAFDEYF DAHQNINSVG QLNSNSPIHD DYFSNQQGLQ GLGQLHSLAT RVGQYGTQQS  480
MQGLLQAQLS FKAPVIHGCF DIQDNLQDML QSMASSQFHN IATKHLPSKH LSRQLER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023870515.1	0.0	protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2N9EY90	0.0	A0A2N9EY90_FAGSY; Uncharacterized protein
STRING	VIT_03s0017g01830.t01	1e-168	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	6e-76	FAR1-related sequence 2