PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14382-augustus-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 286aa    MW: 31179.2 Da    PI: 9.4226
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14382-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.16.1e-1860146191
                                          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 
                                                   ++Y+++A++ GF + +++s+ + ++g+    t+ C + gkre++ kk   + + r++ +t+Ckak
  maker-scaffold14382-augustus-gene-0.8-mRNA-1  60 NYYSKFAQREGFGIYRRSSRCR-DDGKLNYFTLACARAGKRESTAKK---KFSLRQSPKTNCKAK 120
                                                   69*************9987775.9999****************9888...889999********* PP

                                          FAR1  66 lkvkkekdgkwevtkleleHnHelap 91 
                                                   ++v + +dgk+++ ++ leHnHel+p
  maker-scaffold14382-augustus-gene-0.8-mRNA-1 121 VNVALGSDGKFHLCHVILEHNHELSP 146
                                                   ************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1560146IPR004330FAR1 DNA binding domain
Gene3DG3DSA:3.40.50.13608.2E-7242284No hitNo description
SuperFamilySSF1009501.93E-6246285No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEGDSMVNVT LKTDNQGSSC DKERVDGDKV EEQNVGGLGN EEVETPRAGM VFASPEEVRN  60
YYSKFAQREG FGIYRRSSRC RDDGKLNYFT LACARAGKRE STAKKKFSLR QSPKTNCKAK  120
VNVALGSDGK FHLCHVILEH NHELSPGMFH SNRCKKSGGP RAQRRSKAKD PAEAIVHQDY  180
PSLVGVAASC EIIPSVEGVN VTKQLANGDK HHLFPNIGHP TSESTLNHLK RRSSALENSQ  240
NSQDVFKLAL AKRAVELVKS GMVIGLGTGG TSLVIEELGK LIGEGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872109.10.0probable ribose-5-phosphate isomerase 3, chloroplastic isoform X2
TrEMBLA0A2N9J1291e-165A0A2N9J129_FAGSY; Uncharacterized protein
STRINGPOPTR_0006s03800.12e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.33e-12FAR1-related sequence 2