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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | maker-scaffold01051-snap-gene-0.46-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 133aa MW: 15114.8 Da PI: 6.271 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 22.4 | 4e-07 | 70 | 129 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62
+++ +Y+++ GF v k++s+k ++ e+ + t C+ g+++ + ++ + + +++++t C
maker-scaffold01051-snap-gene-0.46-mRNA-1 70 EYFTRYGNKKGFAVAKRTSRKG-NHVEVESLTVACNSAGNQQIKASN-SLKAQPQSKTGRWC 129
589**************99998.7778***************99988.55555555555555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.5E-4 | 70 | 126 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 133 aa Download sequence Send to blast |
MEEEITSGSR LVELNEHNSD NKMKDTMDLK NNELNEDNAE NEKEETRKVK DKVEDPCVGM 60 LFGSIDDIME YFTRYGNKKG FAVAKRTSRK GNHVEVESLT VACNSAGNQQ IKASNSLKAQ 120 PQSKTGRWCH FRI |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023873634.1 | 1e-68 | protein FAR1-RELATED SEQUENCE 4-like | ||||
| TrEMBL | A0A2N9J8F9 | 1e-33 | A0A2N9J8F9_FAGSY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13793 | 7 | 17 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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