PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03291-snap-gene-0.20-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 150aa MW: 17225.2 Da PI: 4.7703 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.5 | 1.2e-09 | 81 | 133 | 37 | 90 |
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +eg++++ ++++e+ +r+et +gCk ++ +kk d++w v k+++ HnHel maker-scaffold03291-snap-gene-0.20-mRNA-1 81 REGFHSQCNEDNERLGPERPETIVGCKTMIGLKKV-DDTWIVCKFVEGHNHELL 133 79999999999888889*****************9.9***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-6 | 81 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MIANNKEPET ISICDMVDDL VHDESEINED QNNVDLSLDD SNQHFACNRH SEPRLDMIFE 60 NLEAVYAYYN AYARRRGFSI REGFHSQCNE DNERLGPERP ETIVGCKTMI GLKKVDDTWI 120 VCKFVEGHNH ELLTPKSTSL LRGHRVITSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023879877.1 | 2e-74 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9EWC0 | 1e-46 | A0A2N9EWC0_FAGSY; Uncharacterized protein | ||||
TrEMBL | A0A2N9FLB9 | 1e-48 | A0A2N9FLB9_FAGSY; Uncharacterized protein | ||||
TrEMBL | A0A2N9GL14 | 2e-48 | A0A2N9GL14_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14634 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-09 | FAR1-related sequence 5 |