PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold25755-snap-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 350aa MW: 40977.6 Da PI: 7.8702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold25755-snap-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.1	7.2e-24	39	125	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 Yn+YA ++GFs+rk k ++ + +++i +r+f Cskeg++ +e+ e+++ ++ etrtgCka ++ + maker-scaffold25755-snap-gene-0.0-mRNA-1 39 LYNNYALQTGFSIRKGKPRYFNGTKNIRQREFLCSKEGFKIDEDAC-EEKNWKKLETRTGCKAFIRFTV 106 7***************************************9998.89999************* PP FAR1 71 ekdgkwevtkleleHnHela 90 e +++w+v+ ++ eHnHela maker-scaffold25755-snap-gene-0.0-mRNA-1 107 E-NDVWRVIAFNPEHNHELA 125 9.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-21	39	125	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.149	303	339	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.2E-6	313	338	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-7	314	341	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
CNSSDVEGIE DCLFVKRLEN SDDNLLDKVA YTENEAYNLY NNYALQTGFS IRKGKPRYFN 60 GTKNIRQREF LCSKEGFKID EDACEEKNWK KLETRTGCKA FIRFTVENDV WRVIAFNPEH 120 NHELALPSER HLLRSGRRIS KPNAELELQN TWDKMMHKFN LEDHHWLNMM YKIRHKWSTA 180 FTKDSFTVEF KASSRSESTN HVLNNIADTT ISLTNFVIKY ESVLAGMRSL EFNEDFRCKQ 240 GAPQRAVKKS GILGHAAQVY TCKIFKLFEY EFLNSLAIEW KQVDCQDTID VFEVKEEDSQ 300 RVHIVHFDHF NSNISCSCKK YESLGILCCH ALRVFNLKNL TKIPSQYILK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

CNSSDVEGIE DCLFVKRLEN SDDNLLDKVA YTENEAYNLY NNYALQTGFS IRKGKPRYFN  60
GTKNIRQREF LCSKEGFKID EDACEEKNWK KLETRTGCKA FIRFTVENDV WRVIAFNPEH  120
NHELALPSER HLLRSGRRIS KPNAELELQN TWDKMMHKFN LEDHHWLNMM YKIRHKWSTA  180
FTKDSFTVEF KASSRSESTN HVLNNIADTT ISLTNFVIKY ESVLAGMRSL EFNEDFRCKQ  240
GAPQRAVKKS GILGHAAQVY TCKIFKLFEY EFLNSLAIEW KQVDCQDTID VFEVKEEDSQ  300
RVHIVHFDHF NSNISCSCKK YESLGILCCH ALRVFNLKNL TKIPSQYILK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023873391.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9ET88	1e-111	A0A2N9ET88_FAGSY; Uncharacterized protein
TrEMBL	A0A2N9FSL8	1e-116	A0A2N9FSL8_FAGSY; Uncharacterized protein
STRING	EMJ09943	8e-60	(Prunus persica)
STRING	EMJ20729	1e-59	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-26	FAR1-related sequence 5