PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold06874-snap-gene-0.7-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 412aa MW: 46793.8 Da PI: 8.9878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold06874-snap-gene-0.7-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	2.9e-20	44	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 +Y+ YAk++GF++r+ + ++s+++g++ +r+fvCskeg++++ +rtgC a ++v++ maker-scaffold06874-snap-gene-0.7-mRNA-1 44 CYSLYAKRMGFKIRTGQLYRSRTDGSVSSRRFVCSKEGFQTN--------------SRTGCPAFIRVQR 98 79***********************************987..............589****** PP FAR1 71 ekdgkwevtkleleHnHela 90 + +gkw+++++ ++HnH+l maker-scaffold06874-snap-gene-0.7-mRNA-1 99 NASGKWVIDHFFKDHNHDLE 118 ****************96 PP
2	FAR1	59.8	8.5e-19	198	271	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 Y++Y+ + GF+vr+ + +s+++g+i +r+fvCskeg++++ +r+gC a +++k+ maker-scaffold06874-snap-gene-0.7-mRNA-1 198 LYHSYGASKGFRVRIGQLFRSRHDGSISSRRFVCSKEGFQHP--------------SRVGCGAYMRIKR 252 7************************************999..............4899***** PP FAR1 71 ekdgkwevtkleleHnHel 89 +++g+w+v++l+++HnH l maker-scaffold06874-snap-gene-0.7-mRNA-1 253 QESGTWVVDRLREDHNHGL 271 ***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-16	44	118	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.7E-14	198	271	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.804	297	335	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-8	307	332	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.0E-7	310	337	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MVIKAKPVGM VRAIDYVNGE HEGGSRLEPQ VGLEFDSSDD ARECYSLYAK RMGFKIRTGQ 60 LYRSRTDGSV SSRRFVCSKE GFQTNSRTGC PAFIRVQRNA SGKWVIDHFF KDHNHDLEST 120 GENPTPFMQS KLPIVKNSLA DVTQRSKVNL LEDVEDRRPC PSGVINVKRV KRDGDDGQSK 180 VQPFLGLVFN SANEAYQLYH SYGASKGFRV RIGQLFRSRH DGSISSRRFV CSKEGFQHPS 240 RVGCGAYMRI KRQESGTWVV DRLREDHNHG LGTQMETHRG SLNASNRFIE ECANDNEKNI 300 VTFCASNLNV SCSCQMFEFE GVLCRHALRV FQILEIREIP SHYILHRWTR NAEYGTVGDA 360 ESVGTSQELK ALMLWSLRET ACKYIEAGSA SLEKYKLAYE IMREGGRKLS WQ

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MVIKAKPVGM VRAIDYVNGE HEGGSRLEPQ VGLEFDSSDD ARECYSLYAK RMGFKIRTGQ  60
LYRSRTDGSV SSRRFVCSKE GFQTNSRTGC PAFIRVQRNA SGKWVIDHFF KDHNHDLEST  120
GENPTPFMQS KLPIVKNSLA DVTQRSKVNL LEDVEDRRPC PSGVINVKRV KRDGDDGQSK  180
VQPFLGLVFN SANEAYQLYH SYGASKGFRV RIGQLFRSRH DGSISSRRFV CSKEGFQHPS  240
RVGCGAYMRI KRQESGTWVV DRLREDHNHG LGTQMETHRG SLNASNRFIE ECANDNEKNI  300
VTFCASNLNV SCSCQMFEFE GVLCRHALRV FQILEIREIP SHYILHRWTR NAEYGTVGDA  360
ESVGTSQELK ALMLWSLRET ACKYIEAGSA SLEKYKLAYE IMREGGRKLS WQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023908034.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	1e-109	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2N9IXY9	1e-174	A0A2N9IXY9_FAGSY; Uncharacterized protein
STRING	XP_010105698.1	1e-136	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-111	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]