PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03390-snap-gene-0.30-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 361aa MW: 40846.2 Da PI: 5.7538

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03390-snap-gene-0.30-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.6	4.6e-14	85	143	31	90
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + f+ ++gkr ++ ++ k+r r+ tr gCka ++++k+++gkw v+kle++HnHel+ maker-scaffold03390-snap-gene-0.30-mRNA-1 85 EGFRPERHGKRIDSGDD-MKRRCARPITREGCKALMTLRKRDNGKWFVAKLEKNHNHELV 143 34555666666666666.99999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-11	79	143	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.716	227	263	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-5	238	265	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.5E-6	241	263	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEEEPSGEAK ELVDSFVALQ EEGDECCVVE DVEAPMLLDD ASEHNVNLEY SERLVGGVVE 60 PTLGMEFTSE DDARNIYNAY AKQTEGFRPE RHGKRIDSGD DMKRRCARPI TREGCKALMT 120 LRKRDNGKWF VAKLEKNHNH ELVTPAMRHF LRSHKQDFDP SKSLSHSCSS PGMGLSDPVN 180 VLINDSNGFD KLEEVFESLA LAVKFTGEDG GRGTYEVARF DEEHKCFFVC FNIAEQIASS 240 SCKMFEFEGV LCRHVLAVFK AKNVFMLPHH YILKQWTRNA KDEGILDVHV HGEMQGKSQK 300 GTKLQYNILY QEAIKCAEEG MTSDHSFRLA LNVLREARIK IFDAKKDAIN PKKLETIAST 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEEEPSGEAK ELVDSFVALQ EEGDECCVVE DVEAPMLLDD ASEHNVNLEY SERLVGGVVE  60
PTLGMEFTSE DDARNIYNAY AKQTEGFRPE RHGKRIDSGD DMKRRCARPI TREGCKALMT  120
LRKRDNGKWF VAKLEKNHNH ELVTPAMRHF LRSHKQDFDP SKSLSHSCSS PGMGLSDPVN  180
VLINDSNGFD KLEEVFESLA LAVKFTGEDG GRGTYEVARF DEEHKCFFVC FNIAEQIASS  240
SCKMFEFEGV LCRHVLAVFK AKNVFMLPHH YILKQWTRNA KDEGILDVHV HGEMQGKSQK  300
GTKLQYNILY QEAIKCAEEG MTSDHSFRLA LNVLREARIK IFDAKKDAIN PKKLETIAST  360
S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259163.1	3e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010259169.1	3e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010259189.1	2e-81	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBL	A0A2N9GY12	6e-98	A0A2N9GY12_FAGSY; Uncharacterized protein
STRING	XP_010259163.1	1e-80	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19680	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-30	FAR1-related sequence 3