PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00965-augustus-gene-0.44-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 443aa    MW: 49932.2 Da    PI: 6.1632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00965-augustus-gene-0.44-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.77e-3277168291
                                           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCk 63 
                                                    fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCk
  maker-scaffold00965-augustus-gene-0.44-mRNA-1  77 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCK 140
                                                    9***************************************998888545677889********* PP

                                           FAR1  64 aklkvkkekdgkwevtkleleHnHelap 91 
                                                    a+l vk++++gkw+v+ ++ eHnHel+p
  maker-scaffold00965-augustus-gene-0.44-mRNA-1 141 ASLSVKMQDSGKWVVSGFVREHNHELVP 168
                                                    **************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-3077168IPR004330FAR1 DNA binding domain
PfamPF044348.1E-13216262IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.276228264IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9239266IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDNEMIEFDI GLGSGGGDDD GVDMDDEEMV DSPAHITTSG GGGAGASSEL YLPEGDLLDL  60
EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC AKEGFRNLNE  120
KRTKDREIKR PRTITRVGCK ASLSVKMQDS GKWVVSGFVR EHNHELVPPD QTPSPMEKQA  180
SELYTRKLFV RFQEELVGTL TFMASKAEDD GEVITYQVSK FGEDHKAYYV KFNVLEMKAT  240
CSCQMFEFSG LLCRHILAVF RVTNVLTLPS HYILKRWTRN AKSSVILEER TSDVYTNYLE  300
SHTVRYNTLR HEVFKFVEEG AKALETYDVA MGALQAAAKK LSHATKNEGK PGMANGRVKG  360
NLVTDGSRAN CTTDDLERCS GQHLSEDDMD RRIRELTNEL ESANRKCEVY RANLLSVLKD  420
IEDHKQQLSI KVQNIKISMK DGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891176.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL81e-119FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A103XD620.0A0A103XD62_CYNCS; FAR1 DNA binding domain-containing protein
STRINGEOX989491e-153(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]